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O87118 (O87118_CLOTM) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 62. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:xynB EMBL BAA33542.1
OrganismClostridium thermocellum EMBL BAA33542.1
Taxonomic identifier1515 [NCBI]
Taxonomic lineageBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium

Protein attributes

Sequence length457 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
O87118 [UniParc].

Last modified November 1, 1998. Version 1.
Checksum: 86A8C048DF12C4C5

FASTA45749,884
        10         20         30         40         50         60 
MKQKLLVTFL ILITFTVSLT LFPVNVRADV VITSNQTGTG GGYNFEYWKD TGNGTMVLKD 

        70         80         90        100        110        120 
GGAFSCEWSN INNILFRKGF KYDETKTHDQ LGYITVTYSC NYQPNGNSYL GVYGWTSNPL 

       130        140        150        160        170        180 
VEYYIIESWG TWRPPGATPK GTITVDGGTY EIYETTRVNQ PSIKGTATFQ QYWSVRTSKR 

       190        200        210        220        230        240 
TSGTISVTEH FKAWERLGMK MGKMYEVALV VEGYQSSGKA DVTSMTITVG NAPSTSSPPG 

       250        260        270        280        290        300 
PTPEPTPRSA FSKIEAEEYN SLKSSTIQTI GTSDGGSGIG YIESGDYLVF NKINFGNGAN 

       310        320        330        340        350        360 
SFKARVASGA DTPTNIQLRL GSPTGTLIGT LTVASTGGWN NYEEKSCSIT NTTGQHDLYL 

       370        380        390        400        410        420 
VFSGPVNIDY FIFDSKGVNP TPTPTSPPQQ DQVLGDLNGD KQVNSTDYTA LKRHLLNITR 

       430        440        450 
LSGTALANAD VNRDGKVDST DLMMLHRYLL RIISKLG 

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References

[1]"Nucleotide sequences of two contiguous and highly homologous xylanase genes xynA and xynB and characterization of XynA from Clostridium thermocellum."
Hayashi H., Takehara M., Hattori T., Kimura T., Karita S., Sakka K., Ohmiya K.
Appl. Microbiol. Biotechnol. 51:348-357(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: F1 EMBL BAA33542.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB010958 Genomic DNA. Translation: BAA33542.1.

3D structure databases

HSSPHSSP built from PDB template 1GMM based on UniProtKB O52780.
ProteinModelPortalO87118.
SMRO87118. Positions 31-233, 251-375.
ModBaseSearch...

Protein family/group databases

CAZyCBM6. Carbohydrate-Binding Module Family 6.
GH11. Glycoside Hydrolase Family 11.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D1.10.1330.10. 1 hit.
2.60.120.180. 1 hit.
InterProIPR016134. Cellulos_enz_dockerin_1.
IPR002105. Cellulos_enz_dockerin_1_Ca-bd.
IPR006584. Cellulose-bd_IV.
IPR005084. CMB_fam6.
IPR008985. ConA-like_lec_gl_sf.
IPR018242. Dockerin_1.
IPR018247. EF_Hand_1_Ca_BS.
IPR008979. Galactose-bd-like.
IPR001137. Glyco_hydro_11.
IPR013319. Glyco_hydro_11/12.
IPR018208. Glyco_hydro_11_AS.
[Graphical view]
PfamPF03422. CBM_6. 1 hit.
PF00404. Dockerin_1. 2 hits.
PF00457. Glyco_hydro_11. 1 hit.
[Graphical view]
PRINTSPR00911. GLHYDRLASE11.
SMARTSM00606. CBD_IV. 1 hit.
[Graphical view]
SUPFAMSSF63446. Cellulos_enz_dockerin_1. 1 hit.
SSF49899. ConA_like_lec_gl. 1 hit.
SSF49785. Gal_bind_like. 1 hit.
PROSITEPS51175. CBM6. 1 hit.
PS00448. CLOS_CELLULOSOME_RPT. 2 hits.
PS00018. EF_HAND_1. 2 hits.
PS00776. GLYCOSYL_HYDROL_F11_1. 1 hit.
PS00777. GLYCOSYL_HYDROL_F11_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameO87118_CLOTM
AccessionPrimary (citable) accession number: O87118
Entry history
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: April 3, 2013
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)