O87118 (O87118_CLOTM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Xylanase EMBL BAA33542.1

Gene names

Name:

xynB EMBL BAA33542.1

Organism

Clostridium thermocellum EMBL BAA33542.1

Taxonomic identifier

1515 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	457 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Biological process	Xylan degradation EMBL BAA33542.1
Gene Ontology (GO)
Biological_process	xylan catabolic process Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	carbohydrate binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O87118 [UniParc]. Last modified November 1, 1998. Version 1. Checksum: 86A8C048DF12C4C5	FASTA	457	49,884
	10 20 30 40 50 60 MKQKLLVTFL ILITFTVSLT LFPVNVRADV VITSNQTGTG GGYNFEYWKD TGNGTMVLKD 70 80 90 100 110 120 GGAFSCEWSN INNILFRKGF KYDETKTHDQ LGYITVTYSC NYQPNGNSYL GVYGWTSNPL 130 140 150 160 170 180 VEYYIIESWG TWRPPGATPK GTITVDGGTY EIYETTRVNQ PSIKGTATFQ QYWSVRTSKR 190 200 210 220 230 240 TSGTISVTEH FKAWERLGMK MGKMYEVALV VEGYQSSGKA DVTSMTITVG NAPSTSSPPG 250 260 270 280 290 300 PTPEPTPRSA FSKIEAEEYN SLKSSTIQTI GTSDGGSGIG YIESGDYLVF NKINFGNGAN 310 320 330 340 350 360 SFKARVASGA DTPTNIQLRL GSPTGTLIGT LTVASTGGWN NYEEKSCSIT NTTGQHDLYL 370 380 390 400 410 420 VFSGPVNIDY FIFDSKGVNP TPTPTSPPQQ DQVLGDLNGD KQVNSTDYTA LKRHLLNITR 430 440 450 LSGTALANAD VNRDGKVDST DLMMLHRYLL RIISKLG

References

[1]

"Nucleotide sequences of two contiguous and highly homologous xylanase genes xynA and xynB and characterization of XynA from Clostridium thermocellum." Hayashi H., Takehara M., Hattori T., Kimura T., Karita S., Sakka K., Ohmiya K. Appl. Microbiol. Biotechnol. 51:348-357(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: F1 EMBL BAA33542.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AB010958 Genomic DNA. Translation: BAA33542.1.
3D structure databases
HSSP	HSSP built from PDB template 1GMM based on UniProtKB O52780.
ProteinModelPortal	O87118.
SMR	O87118. Positions 31-233, 251-375.
ModBase	Search...
Protein family/group databases
CAZy	CBM6. Carbohydrate-Binding Module Family 6. GH11. Glycoside Hydrolase Family 11.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Family and domain databases
Gene3D	1.10.1330.10. 1 hit. 2.60.120.180. 1 hit.
InterPro	IPR016134. Cellulos_enz_dockerin_1. IPR002105. Cellulos_enz_dockerin_1_Ca-bd. IPR006584. Cellulose-bd_IV. IPR005084. CMB_fam6. IPR008985. ConA-like_lec_gl_sf. IPR018242. Dockerin_1. IPR018247. EF_Hand_1_Ca_BS. IPR008979. Galactose-bd-like. IPR001137. Glyco_hydro_11. IPR013319. Glyco_hydro_11/12. IPR018208. Glyco_hydro_11_AS. [Graphical view]
Pfam	PF03422. CBM_6. 1 hit. PF00404. Dockerin_1. 2 hits. PF00457. Glyco_hydro_11. 1 hit. [Graphical view]
PRINTS	PR00911. GLHYDRLASE11.
SMART	SM00606. CBD_IV. 1 hit. [Graphical view]
SUPFAM	SSF63446. Cellulos_enz_dockerin_1. 1 hit. SSF49899. ConA_like_lec_gl. 1 hit. SSF49785. Gal_bind_like. 1 hit.
PROSITE	PS51175. CBM6. 1 hit. PS00448. CLOS_CELLULOSOME_RPT. 2 hits. PS00018. EF_HAND_1. 2 hits. PS00776. GLYCOSYL_HYDROL_F11_1. 1 hit. PS00777. GLYCOSYL_HYDROL_F11_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

O87118_CLOTM

Accession

Primary (citable) accession number: O87118

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1998
Last sequence update:	November 1, 1998
Last modified:	April 3, 2013
This is version 62 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)