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Protein
Submitted name:

Putative RNA polymerase sigma factor

Gene

SCO6520

Organism
Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Putative RNA polymerase sigma factorImported
Gene namesi
Ordered Locus Names:SCO6520Imported
OrganismiStreptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)Imported
Taxonomic identifieri100226 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomycesStreptomyces albidoflavus group
Proteomesi
  • UP000001973 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi100226.SCO6520.

Structurei

3D structure databases

ProteinModelPortaliO86702.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini41 – 10969Sigma70_r2InterPro annotationAdd
BLAST
Domaini119 – 17355Sigma70_r3InterPro annotationAdd
BLAST
Domaini208 – 25649Sigma70_r4InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the sigma-70 factor family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4108N6D. Bacteria.
COG1191. LUCA.
HOGENOMiHOG000270270.
InParanoidiO86702.
KOiK03090.
OMAiAEHANMS.
OrthoDBiPOG091H09IG.
PhylomeDBiO86702.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR014322. RNA_pol_sigma-B/F/G.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02980. SigBFG. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.

Sequencei

Sequence statusi: Complete.

O86702-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPIHASVKHP HDDAPDTADA FRRLATLPDG PEHDELRDRI VEAWLPMAER
60 70 80 90 100
LAGRFRSRGE SFEDLRQVAA LGLVKAVDRY DPERGNAFES YAVPTITGEI
110 120 130 140 150
KRHFRDHMWT LHVPRRVQEL RNRVRFAGQD LSQTIPGRRP TVAEIAERAE
160 170 180 190 200
LSEEDVRVGL EALESFTALS LDAELPGSED GYSLGDALGA PDPALDTVVD
210 220 230 240 250
REAVKDRLAA LPPRERAILY MRFFNDMTQS RIAEQLGISQ MHVSRLITRC
260
CDRVREQVLR DPGPQA
Length:266
Mass (Da):30,005
Last modified:November 1, 1998 - v1
Checksum:i4D4552FF066B1D2B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL939128 Genomic DNA. Translation: CAA20617.1.
PIRiT35212.
RefSeqiNP_630601.1. NC_003888.3.
WP_011030982.1. NC_003888.3.

Genome annotation databases

EnsemblBacteriaiCAA20617; CAA20617; CAA20617.
GeneIDi1101959.
KEGGisco:SCO6520.
PATRICi23742953. VBIStrCoe124346_6623.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL939128 Genomic DNA. Translation: CAA20617.1.
PIRiT35212.
RefSeqiNP_630601.1. NC_003888.3.
WP_011030982.1. NC_003888.3.

3D structure databases

ProteinModelPortaliO86702.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi100226.SCO6520.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAA20617; CAA20617; CAA20617.
GeneIDi1101959.
KEGGisco:SCO6520.
PATRICi23742953. VBIStrCoe124346_6623.

Phylogenomic databases

eggNOGiENOG4108N6D. Bacteria.
COG1191. LUCA.
HOGENOMiHOG000270270.
InParanoidiO86702.
KOiK03090.
OMAiAEHANMS.
OrthoDBiPOG091H09IG.
PhylomeDBiO86702.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR014322. RNA_pol_sigma-B/F/G.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02980. SigBFG. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiO86702_STRCO
AccessioniPrimary (citable) accession number: O86702
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: September 7, 2016
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.