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Protein
Submitted name:

Putative RNA polymerase sigma factor

Gene

SCO6520

Organism
Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation, Sigma factorSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Submitted name:
Putative RNA polymerase sigma factorImported
Gene namesi
Ordered Locus Names:SCO6520Imported
OrganismiStreptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)Imported
Taxonomic identifieri100226 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomycesStreptomyces albidoflavus group
Proteomesi
  • UP000001973 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi100226.SCO6520

Structurei

3D structure databases

ProteinModelPortaliO86702
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini41 – 109Sigma70_r2InterPro annotationAdd BLAST69
Domaini119 – 173Sigma70_r3InterPro annotationAdd BLAST55
Domaini208 – 256Sigma70_r4InterPro annotationAdd BLAST49

Sequence similaritiesi

Belongs to the sigma-70 factor family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4108N6D Bacteria
COG1191 LUCA
HOGENOMiHOG000270270
InParanoidiO86702
KOiK03090
OMAiAEHANMS
OrthoDBiPOG091H09IG
PhylomeDBiO86702

Family and domain databases

Gene3Di1.10.10.10, 2 hits
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR014322 RNA_pol_sigma-B/F/G
IPR000943 RNA_pol_sigma70
IPR007627 RNA_pol_sigma70_r2
IPR007624 RNA_pol_sigma70_r3
IPR007630 RNA_pol_sigma70_r4
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF04542 Sigma70_r2, 1 hit
PF04539 Sigma70_r3, 1 hit
PF04545 Sigma70_r4, 1 hit
PRINTSiPR00046 SIGMA70FCT
SUPFAMiSSF88659 SSF88659, 2 hits
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02980 SigBFG, 1 hit
TIGR02937 sigma70-ECF, 1 hit

Sequencei

Sequence statusi: Complete.

O86702-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPIHASVKHP HDDAPDTADA FRRLATLPDG PEHDELRDRI VEAWLPMAER
60 70 80 90 100
LAGRFRSRGE SFEDLRQVAA LGLVKAVDRY DPERGNAFES YAVPTITGEI
110 120 130 140 150
KRHFRDHMWT LHVPRRVQEL RNRVRFAGQD LSQTIPGRRP TVAEIAERAE
160 170 180 190 200
LSEEDVRVGL EALESFTALS LDAELPGSED GYSLGDALGA PDPALDTVVD
210 220 230 240 250
REAVKDRLAA LPPRERAILY MRFFNDMTQS RIAEQLGISQ MHVSRLITRC
260
CDRVREQVLR DPGPQA
Length:266
Mass (Da):30,005
Last modified:November 1, 1998 - v1
Checksum:i4D4552FF066B1D2B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL939128 Genomic DNA Translation: CAA20617.1
PIRiT35212
RefSeqiNP_630601.1, NC_003888.3
WP_011030982.1, NC_003888.3

Genome annotation databases

EnsemblBacteriaiCAA20617; CAA20617; CAA20617
GeneIDi1101959
KEGGisco:SCO6520
PATRICifig|100226.15.peg.6623

Similar proteinsi

Entry informationi

Entry nameiO86702_STRCO
AccessioniPrimary (citable) accession number: O86702
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: April 25, 2018
This is version 110 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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