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Protein
Submitted name:

Putative transcriptional regulator

Gene

SCO5483

Organism
Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationSAAS annotation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Putative transcriptional regulatorImported
Gene namesi
Ordered Locus Names:SCO5483Imported
OrganismiStreptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)Imported
Taxonomic identifieri100226 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomycesStreptomyces albidoflavus group
Proteomesi
  • UP000001973 Componenti: Chromosome

PTM / Processingi

Proteomic databases

PRIDEiO86578.

Interactioni

Protein-protein interaction databases

STRINGi100226.SCO5483.

Structurei

3D structure databases

ProteinModelPortaliO86578.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini13 – 7361HTH tetR-type DNA-bindingInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4105EJ2. Bacteria.
COG1309. LUCA.
HOGENOMiHOG000270364.
InParanoidiO86578.
OMAiHVRFIAR.
OrthoDBiEOG6ZPT09.
PhylomeDBiO86578.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O86578-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSHTPGVRQA QKRKTRQALL DAALGLLEEQ SLSSLGLREV TRAVGVAPTA
60 70 80 90 100
FYRHFHSTAD LGVALVEEAL GSLHPMIRTT MSPAEDDDER IARAVELIAG
110 120 130 140 150
HVAAHPAHVR FIARERHGGV QPVRRAIREQ LARFAEEVRA ELATDASAAG
160 170 180 190 200
WSETDLRMLA GLYVDQMLIT ASLFLETLDA PEEERRRAVE TARRQLRLIS

VGRTHWLD
Length:208
Mass (Da):23,081
Last modified:November 1, 1998 - v1
Checksum:i022079434B59F237
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL939123 Genomic DNA. Translation: CAA20186.1.
PIRiT34763.
RefSeqiNP_629619.1. NC_003888.3.
WP_003973515.1. NC_003888.3.

Genome annotation databases

EnsemblBacteriaiCAA20186; CAA20186; CAA20186.
GeneIDi1100923.
KEGGisco:SCO5483.
PATRICi23740822. VBIStrCoe124346_5567.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL939123 Genomic DNA. Translation: CAA20186.1.
PIRiT34763.
RefSeqiNP_629619.1. NC_003888.3.
WP_003973515.1. NC_003888.3.

3D structure databases

ProteinModelPortaliO86578.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi100226.SCO5483.

Proteomic databases

PRIDEiO86578.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAA20186; CAA20186; CAA20186.
GeneIDi1100923.
KEGGisco:SCO5483.
PATRICi23740822. VBIStrCoe124346_5567.

Phylogenomic databases

eggNOGiENOG4105EJ2. Bacteria.
COG1309. LUCA.
HOGENOMiHOG000270364.
InParanoidiO86578.
OMAiHVRFIAR.
OrthoDBiEOG6ZPT09.
PhylomeDBiO86578.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-471 / A3(2) / M145Imported.

Entry informationi

Entry nameiO86578_STRCO
AccessioniPrimary (citable) accession number: O86578
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: March 16, 2016
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.