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Protein
Submitted name:

Response regulator YtbR

Gene

ytbR

Organism
Yersinia pseudotuberculosis
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Response regulator YtbRImported
Gene namesi
Name:ytbRImported
OrganismiYersinia pseudotuberculosisImported
Taxonomic identifieri633 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesYersiniaceaeYersinia

Structurei

3D structure databases

ProteinModelPortaliO85822.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 HTH luxR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000219235.
KOiK19734.

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.30.450.80. 1 hit.
InterProiIPR016032. Sig_transdc_resp-reg_C-effctor.
IPR005143. TF_LuxR_autoind-bd_dom.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF03472. Autoind_bind. 1 hit.
PF00196. GerE. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF75516. SSF75516. 1 hit.
PROSITEiPS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O85822-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHSVFNRSNE VIETLRDYID RKLTIYDSPK YTYMVINKKN PGDIFIVTSY
60 70 80 90 100
PNEWAELYTN NNYQNIDPVV LIAFRRFSPF SWDENITVLS ELKLSKIFTL
110 120 130 140 150
SKKYNIVNGF TFVLHDTMNN LAMLSLIMDD SALNGVESRV LNDRDRLQML
160 170 180 190 200
LIETHEKMLT LSQRNMNIQE RQGKGMPGKA ILSPRENEVL YWASMGKTYQ
210 220 230 240
EIAIITNITP RTVKYHIGNV VKKLGVINAK QAIGLGVELE IIKPILA
Length:247
Mass (Da):28,451
Last modified:June 1, 2003 - v2
Checksum:i71272BDD1613967C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF079136 Genomic DNA. Translation: AAC28703.2.
RefSeqiWP_002211655.1. NZ_KN150741.1.

Genome annotation databases

EnsemblBacteriaiCNE67454; CNE67454; ERS008467_04184.
CNI64488; CNI64488; ERS008473_04031.
KEGGiypc:BZ23_2819.
ypq:DJ40_3179.
ypr:BZ20_2856.
ypu:BZ21_2538.
PATRICi18645791. VBIYerPse22266_3936.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF079136 Genomic DNA. Translation: AAC28703.2.
RefSeqiWP_002211655.1. NZ_KN150741.1.

3D structure databases

ProteinModelPortaliO85822.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCNE67454; CNE67454; ERS008467_04184.
CNI64488; CNI64488; ERS008473_04031.
KEGGiypc:BZ23_2819.
ypq:DJ40_3179.
ypr:BZ20_2856.
ypu:BZ21_2538.
PATRICi18645791. VBIYerPse22266_3936.

Phylogenomic databases

HOGENOMiHOG000219235.
KOiK19734.

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.30.450.80. 1 hit.
InterProiIPR016032. Sig_transdc_resp-reg_C-effctor.
IPR005143. TF_LuxR_autoind-bd_dom.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF03472. Autoind_bind. 1 hit.
PF00196. GerE. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF75516. SSF75516. 1 hit.
PROSITEiPS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO85822_YERPU
AccessioniPrimary (citable) accession number: O85822
Secondary accession number(s): Q666J7
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: June 1, 2003
Last modified: November 30, 2016
This is version 117 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.