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Protein
Submitted name:

Response regulator YtbR

Gene

ytbR

Organism
Yersinia pseudotuberculosis
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi199 – 218H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Response regulator YtbRImported
Gene namesi
Name:ytbRImported
OrganismiYersinia pseudotuberculosisImported
Taxonomic identifieri633 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesYersiniaceaeYersinia

Structurei

3D structure databases

ProteinModelPortaliO85822.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000219235.
KOiK19734.

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.30.450.80. 1 hit.
InterProiView protein in InterPro
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR005143. TF_LuxR_autoind-bd_dom.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF03472. Autoind_bind. 1 hit.
PF00196. GerE. 1 hit.
PRINTSiPR00038. HTHLUXR.
SMARTiView protein in SMART
SM00421. HTH_LUXR. 1 hit.
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF75516. SSF75516. 1 hit.
PROSITEiView protein in PROSITE
PS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.

Sequencei

Sequence statusi: Complete.

O85822-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHSVFNRSNE VIETLRDYID RKLTIYDSPK YTYMVINKKN PGDIFIVTSY
60 70 80 90 100
PNEWAELYTN NNYQNIDPVV LIAFRRFSPF SWDENITVLS ELKLSKIFTL
110 120 130 140 150
SKKYNIVNGF TFVLHDTMNN LAMLSLIMDD SALNGVESRV LNDRDRLQML
160 170 180 190 200
LIETHEKMLT LSQRNMNIQE RQGKGMPGKA ILSPRENEVL YWASMGKTYQ
210 220 230 240
EIAIITNITP RTVKYHIGNV VKKLGVINAK QAIGLGVELE IIKPILA
Length:247
Mass (Da):28,451
Last modified:June 1, 2003 - v2
Checksum:i71272BDD1613967C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF079136 Genomic DNA. Translation: AAC28703.2.
RefSeqiWP_002211655.1. NZ_LT596221.1.

Genome annotation databases

EnsemblBacteriaiCNE67454; CNE67454; ERS008467_04184.
CNI64488; CNI64488; ERS008473_04031.
KEGGiypc:BZ23_2819.
ypq:DJ40_3179.
ypr:BZ20_2856.
ypu:BZ21_2538.
PATRICi18645791. VBIYerPse22266_3936.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF079136 Genomic DNA. Translation: AAC28703.2.
RefSeqiWP_002211655.1. NZ_LT596221.1.

3D structure databases

ProteinModelPortaliO85822.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCNE67454; CNE67454; ERS008467_04184.
CNI64488; CNI64488; ERS008473_04031.
KEGGiypc:BZ23_2819.
ypq:DJ40_3179.
ypr:BZ20_2856.
ypu:BZ21_2538.
PATRICi18645791. VBIYerPse22266_3936.

Phylogenomic databases

HOGENOMiHOG000219235.
KOiK19734.

Family and domain databases

CDDicd06170. LuxR_C_like. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.30.450.80. 1 hit.
InterProiView protein in InterPro
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR005143. TF_LuxR_autoind-bd_dom.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF03472. Autoind_bind. 1 hit.
PF00196. GerE. 1 hit.
PRINTSiPR00038. HTHLUXR.
SMARTiView protein in SMART
SM00421. HTH_LUXR. 1 hit.
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF75516. SSF75516. 1 hit.
PROSITEiView protein in PROSITE
PS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiO85822_YERPU
AccessioniPrimary (citable) accession number: O85822
Secondary accession number(s): Q666J7
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: June 1, 2003
Last modified: March 15, 2017
This is version 120 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.