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Protein
Submitted name:

Positive phenol-degradative gene regulator

Gene

poxR

Organism
Ralstonia sp. E2
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation, Two-component regulatory systemSAAS annotation

Keywords - Ligandi

ATP-bindingUniRule annotationSAAS annotation, DNA-bindingUniRule annotationSAAS annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
Positive phenol-degradative gene regulatorImported
Gene namesi
Name:poxRImported
OrganismiRalstonia sp. E2Imported
Taxonomic identifieri67939 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeRalstonia

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
5FRUX-ray1.85A/B1-211[»]
5FRVX-ray1.90A/B1-211[»]
5FRWX-ray2.10A/B1-211[»]
5FRXX-ray2.40A/B1-211[»]
5FRYX-ray1.79A/B1-211[»]
5FRZX-ray2.10A/B1-211[»]
5FS0X-ray2.40A/B1-211[»]
ProteinModelPortaliO84957.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini237 – 466230Sigma-54 factor interactionInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 sigma-54 factor interaction domain.UniRule annotation

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR024096. NO_sig/Golgi_transp_ligand-bd.
IPR027417. P-loop_NTPase.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
IPR004096. V4R.
IPR010523. XylR_N.
[Graphical view]
PfamiPF02954. HTH_8. 1 hit.
PF00158. Sigma54_activat. 1 hit.
PF02830. V4R. 1 hit.
PF06505. XylR_N. 1 hit.
[Graphical view]
PRINTSiPR01590. HTHFIS.
ProDomiPD485437. XylR_N. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00382. AAA. 1 hit.
SM00989. V4R. 1 hit.
[Graphical view]
SUPFAMiSSF111126. SSF111126. 1 hit.
SSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEiPS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O84957-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSSTDNFSA TMRDGLSNLA RRLRFAMKEG SIWLGEQRMI LLHTAALGAL
60 70 80 90 100
RKELVDTLGM ERARGLFMRM GFHSGVRDAE LAKTMRSGHS DFGMLEMGPC
110 120 130 140 150
LHTIEGVVRV TPLTVDINIA AGVYHGEFLW EDSFEGDVHR QMFGVAQAPV
160 170 180 190 200
CWMQIGYATG YTSALMGKTI LYRELECVGC GHPHCRILGK PLEQWEDGEA
210 220 230 240 250
ELALYQPDPV IDTILALQSE VEQLRALQRA NDQPADLVGG SPGFRAAWNL
260 270 280 290 300
LQRAAGSSVT VLLLGETGVG KERFAQALHG VSARAGKPFV AVNCAAIPDE
310 320 330 340 350
LIESELFGVE KGAFTGAHQS RAGRFERAHG GTLFLDELGE LSASAQSKLL
360 370 380 390 400
RVLQEGEVER VGGNEARKVD VRLVAATNVD LAEAVRQGTF RKDLYYRLNV
410 420 430 440 450
YPVTIPPLRE RLDDIRLLAE RFTARYGARH GKKILGITDR ALAELRRYDW
460 470 480 490 500
PGNVRELENV IERGVILAAN GGQISAEQLF LPGAEAPPAV DTTPRLGEQG
510 520 530 540 550
ALPGLREAAV HGLLDYMAEN GLALGEVESV LMEAAMQRAD GNLSQAARLL
560
GLTRPQLAYR WKTRGTRG
Length:568
Mass (Da):62,076
Last modified:November 1, 1998 - v1
Checksum:i45C2F316C50F6990
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF026065 Genomic DNA. Translation: AAC32451.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF026065 Genomic DNA. Translation: AAC32451.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
5FRUX-ray1.85A/B1-211[»]
5FRVX-ray1.90A/B1-211[»]
5FRWX-ray2.10A/B1-211[»]
5FRXX-ray2.40A/B1-211[»]
5FRYX-ray1.79A/B1-211[»]
5FRZX-ray2.10A/B1-211[»]
5FS0X-ray2.40A/B1-211[»]
ProteinModelPortaliO84957.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR024096. NO_sig/Golgi_transp_ligand-bd.
IPR027417. P-loop_NTPase.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
IPR004096. V4R.
IPR010523. XylR_N.
[Graphical view]
PfamiPF02954. HTH_8. 1 hit.
PF00158. Sigma54_activat. 1 hit.
PF02830. V4R. 1 hit.
PF06505. XylR_N. 1 hit.
[Graphical view]
PRINTSiPR01590. HTHFIS.
ProDomiPD485437. XylR_N. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00382. AAA. 1 hit.
SM00989. V4R. 1 hit.
[Graphical view]
SUPFAMiSSF111126. SSF111126. 1 hit.
SSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEiPS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Watanabe K., Hino S.
    Submitted (SEP-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: E2Imported.
  2. "Structural Analysis of the Phenol-Responsive Sensory Domain of the Transcription Activator PoxR."
    Patil V.V., Park K.-H., Lee S.-G., Woo E.J.
    Structure 624:624-630(2016) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.79 ANGSTROMS) OF 1-211.
  3. "Phenol hydroxylase cloned from Ralstonia eutropha strain E2 exhibits novel kinetic properties."
    Hino S., Watanabe K., Takahashi N.
    Microbiology 144:0-0(0) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: E2Imported.

Entry informationi

Entry nameiO84957_9RALS
AccessioniPrimary (citable) accession number: O84957
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: July 6, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.