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Protein
Submitted name:

Putative uncharacterized protein cbbR

Gene

cbbR

Organism
Thiomonas intermedia (strain K12) (Thiobacillus intermedius)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciTINT75379:GH6C-1676-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized protein cbbRImported
Submitted name:
Transcriptional regulator, LysR familyImported
Gene namesi
Name:cbbRImported
Ordered Locus Names:Tint_1656Imported
OrganismiThiomonas intermedia (strain K12) (Thiobacillus intermedius)Imported
Taxonomic identifieri75379 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesThiomonas
Proteomesi
  • UP000002185 Componenti: Chromosome

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini4 – 6158HTH lysR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000233518.
OMAiLNNPIVA.
OrthoDBiPOG091H031C.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O84916-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIRITFRQLE ILQAVADCGS FSRASEKLHL TQPAVSMQIK QLENLLDMPL
60 70 80 90 100
FEHAGKKIRL TEAGNVALRS AGIVTRELND LEQSLSNLKG LRGGVLTVSV
110 120 130 140 150
ASTASVFAAR LMALFRRQFP DVEVSLNVVN RETLLRHLTE NVSDLALMGT
160 170 180 190 200
PPEGYQLNAQ PFMDNPLVII AAPDHPLARK RAIPLKRLLE EPLVVREPAS
210 220 230 240 250
GTRNALENFI RERQLPFKPT MEMNKNEAIK HAVEAGLGVG LVSLHTVQAE
260 270 280 290 300
LSSGQLSVLD VEGFPLKRQW FLVQRDGKRL SPAAQAFAEL VLSKGPSIMA

AAETKTG
Length:307
Mass (Da):33,707
Last modified:November 1, 1998 - v1
Checksum:iD6996094B39047C3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF012127 Genomic DNA. Translation: AAC24963.1.
CP002021 Genomic DNA. Translation: ADG31026.1.
RefSeqiWP_013123278.1. NC_014153.1.

Genome annotation databases

EnsemblBacteriaiADG31026; ADG31026; Tint_1656.
KEGGitin:Tint_1656.
PATRICi38293855. VBIThiInt85915_1686.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF012127 Genomic DNA. Translation: AAC24963.1.
CP002021 Genomic DNA. Translation: ADG31026.1.
RefSeqiWP_013123278.1. NC_014153.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADG31026; ADG31026; Tint_1656.
KEGGitin:Tint_1656.
PATRICi38293855. VBIThiInt85915_1686.

Phylogenomic databases

HOGENOMiHOG000233518.
OMAiLNNPIVA.
OrthoDBiPOG091H031C.

Enzyme and pathway databases

BioCyciTINT75379:GH6C-1676-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO84916_THIK1
AccessioniPrimary (citable) accession number: O84916
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: September 7, 2016
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.