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Protein

30S ribosomal protein S1

Gene

rpsA

Organism
Chlamydia trachomatis (strain D/UW-3/Cx)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding

Enzyme and pathway databases

BioCyciCTRA272561:G1G18-103-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S1
Gene namesi
Name:rpsA
Synonyms:rs1
Ordered Locus Names:CT_098
OrganismiChlamydia trachomatis (strain D/UW-3/Cx)
Taxonomic identifieri272561 [NCBI]
Taxonomic lineageiBacteriaChlamydiaeChlamydialesChlamydiaceaeChlamydia/Chlamydophila groupChlamydia
Proteomesi
  • UP000000431 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001960321 – 56930S ribosomal protein S1Add BLAST569

Structurei

3D structure databases

ProteinModelPortaliO84100
SMRiO84100
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini52 – 116S1 motif 1PROSITE-ProRule annotationAdd BLAST65
Domaini134 – 199S1 motif 2PROSITE-ProRule annotationAdd BLAST66
Domaini220 – 288S1 motif 3PROSITE-ProRule annotationAdd BLAST69
Domaini305 – 375S1 motif 4PROSITE-ProRule annotationAdd BLAST71
Domaini392 – 462S1 motif 5PROSITE-ProRule annotationAdd BLAST71
Domaini479 – 548S1 motif 6PROSITE-ProRule annotationAdd BLAST70

Sequence similaritiesi

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4105CAV Bacteria
COG0539 LUCA
InParanoidiO84100
KOiK02945
OMAiSLNEFRY

Family and domain databases

InterProiView protein in InterPro
IPR012340 NA-bd_OB-fold
IPR000110 Ribosomal_S1
IPR022967 S1_dom
IPR003029 S1_domain
PfamiView protein in Pfam
PF00575 S1, 6 hits
SMARTiView protein in SMART
SM00316 S1, 6 hits
SUPFAMiSSF50249 SSF50249, 6 hits
TIGRFAMsiTIGR00717 rpsA, 1 hit
PROSITEiView protein in PROSITE
PS50126 S1, 6 hits

Sequencei

Sequence statusi: Complete.

O84100-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKQADYTWG AKKNLDTIAC LPEDVKQFKD LLYAMYGFTA TEEEPTSEVH
60 70 80 90 100
PGAILKGTVV DISKDFVVVD VGLKSEGVIP MSEFIDSSEG LTVGAEVEVY
110 120 130 140 150
LDQTEDDEGK VVLSREKATR QRQWEYILAH CEEGSIVKGQ ITRKVKGGLI
160 170 180 190 200
VDIGMEAFLP GSQIDNKKIK NLDDYVGKVC EFKILKINVD RRNVVVSRRE
210 220 230 240 250
LLEAERISKK AELIEQITIG ERRKGIVKNI TDFGVFLDLD GIDGLLHITD
260 270 280 290 300
MTWKRIRHPS EMVELNQELE VIILSVDKEK GRVALGLKQK EHNPWEDIEK
310 320 330 340 350
KYPPGKRVRG KIVKLLPYGA FIEIEEGIEG LIHVSEMSWV KNIVDPNEVV
360 370 380 390 400
NKGDEVEVVV LSIQKDEGKI SLGLKQTKHN PWDNIEEKYP IGLRVTAEIK
410 420 430 440 450
NLTNYGAFVE LEPGIEGLIH ISDMSWIKKV SHPSELFKKG NTVEAVILSV
460 470 480 490 500
DKESKKITLG VKQLTPNPWD EIEVMFPVGS DISGVVTKIT AFGAFVELQN
510 520 530 540 550
GIEGLIHVSE LSEKPFAKIE DVLSIGDKVS AKVIKLDPDH KKVSLSIKEF
560
LVHGGDAGHD AEEESSDRD
Length:569
Mass (Da):63,574
Last modified:November 1, 1998 - v1
Checksum:iAB89D73C75902EE1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE001273 Genomic DNA Translation: AAC67689.1
PIRiA71556
RefSeqiNP_219601.1, NC_000117.1
WP_009873044.1, NC_000117.1

Genome annotation databases

EnsemblBacteriaiAAC67689; AAC67689; CT_098
GeneIDi35554281
884179
KEGGictr:CT_098
PATRICifig|272561.5.peg.108

Similar proteinsi

Entry informationi

Entry nameiRS1_CHLTR
AccessioniPrimary (citable) accession number: O84100
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: November 1, 1998
Last modified: March 28, 2018
This is version 94 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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