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Protein
Submitted name:

Spermidine/putrescine ABC superfamily ATP binding cassette transporter, binding protein

Gene

potD

Organism
Treponema pallidum (strain Nichols)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciTPAL243276:GC1H-696-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Spermidine/putrescine ABC superfamily ATP binding cassette transporter, binding proteinImported
Submitted name:
Spermidine/putrescine ABC transporter, periplasmic binding protein (PotD)Imported
Gene namesi
Name:potDImported
Ordered Locus Names:TP_0655Imported
ORF Names:TPANIC_0655Imported
OrganismiTreponema pallidum (strain Nichols)Imported
Taxonomic identifieri243276 [NCBI]
Taxonomic lineageiBacteriaSpirochaetesSpirochaetalesSpirochaetaceaeTreponema
Proteomesi
  • UP000000811 Componenti: Chromosome
  • UP000014259 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2929Sequence analysisAdd
BLAST
Chaini30 – 348319Sequence analysisPRO_5007206834Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi243276.TP0655.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2V84X-ray1.78A25-348[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4108HM4. Bacteria.
COG0687. LUCA.
KOiK11069.
OMAiVEYYIPK.
OrthoDBiEOG66XBH9.

Family and domain databases

InterProiIPR001188. Sperm_putr-bd.
[Graphical view]
PIRSFiPIRSF019574. Periplasmic_polyamine_BP. 1 hit.
PRINTSiPR00909. SPERMDNBNDNG.

Sequencei

Sequence statusi: Complete.

O83661-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRFCVSSSR ILSLLFLSLW MGSCLQTRQD VLYLYNWTYY TPTSLIKKFE
60 70 80 90 100
QQYNVQVVYD DYASNEDMFA KLSIGASGYD LVVPSGDFVS IMKRKHLLEK
110 120 130 140 150
IDLSKIPNVQ FIKESVRARI AYDPKMEYSV PYYLGAAGIA VNKKAVPSYA
160 170 180 190 200
RTWSIFSRKD LAYRMSMMDD MREVMGAALA SLGYNVNTKN EQELAQAAIL
210 220 230 240 250
VTDHWKPNLV KFDSDGYAKS FASGDFVVAH GFAEAFFAET PEAMHEHIDF
260 270 280 290 300
FIPQDVASPV YVDSFCIPKG ARNRDLAHAF INFFLEPAHY AEFLDTFGFP
310 320 330 340
STIHREAAAY QKKTPYYSEH DLERGTLKTD VGAAIEHYNA HWNAVRFR
Length:348
Mass (Da):39,752
Last modified:November 1, 1998 - v1
Checksum:i44ABD94E5D1F920B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000520 Genomic DNA. Translation: AAC65630.1.
CP004010 Genomic DNA. Translation: AGN75834.1.
PIRiH71296.
RefSeqiWP_010882100.1. NC_021490.2.

Genome annotation databases

EnsemblBacteriaiAAC65630; AAC65630; TP_0655.
AGN75834; AGN75834; TPANIC_0655.
GeneIDi2611153.
KEGGitpa:TP_0655.
tpw:TPANIC_0655.
PATRICi20531385. VBITrePal57110_0697.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000520 Genomic DNA. Translation: AAC65630.1.
CP004010 Genomic DNA. Translation: AGN75834.1.
PIRiH71296.
RefSeqiWP_010882100.1. NC_021490.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2V84X-ray1.78A25-348[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243276.TP0655.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC65630; AAC65630; TP_0655.
AGN75834; AGN75834; TPANIC_0655.
GeneIDi2611153.
KEGGitpa:TP_0655.
tpw:TPANIC_0655.
PATRICi20531385. VBITrePal57110_0697.

Phylogenomic databases

eggNOGiENOG4108HM4. Bacteria.
COG0687. LUCA.
KOiK11069.
OMAiVEYYIPK.
OrthoDBiEOG66XBH9.

Enzyme and pathway databases

BioCyciTPAL243276:GC1H-696-MONOMER.

Family and domain databases

InterProiIPR001188. Sperm_putr-bd.
[Graphical view]
PIRSFiPIRSF019574. Periplasmic_polyamine_BP. 1 hit.
PRINTSiPR00909. SPERMDNBNDNG.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NicholsImported.
  2. "Resequencing of Treponema pallidum ssp. pallidum strains Nichols and SS14: correction of sequencing errors resulted in increased separation of syphilis treponeme subclusters."
    Petrosova H., Pospisilova P., Strouhal M., Cejkova D., Zobanikova M., Mikalova L., Sodergren E., Weinstock G.M., Smajs D.
    PLoS ONE 8:E74319-E74319(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NicholsImported.

Entry informationi

Entry nameiO83661_TREPA
AccessioniPrimary (citable) accession number: O83661
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: May 11, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.