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Protein
Submitted name:

Transposase

Gene

tnpB

Organism
Deinococcus radiodurans
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi9 – 91Magnesium 1Combined sources
Metal bindingi45 – 451Magnesium 2Combined sources
Metal bindingi45 – 451ZincCombined sources
Metal bindingi49 – 491Magnesium 2Combined sources
Metal bindingi49 – 491ZincCombined sources
Metal bindingi123 – 1231Magnesium 1Combined sources

GO - Molecular functioni

GO - Biological processi

  • negative regulation of transposon integration Source: CACAO
  • transposition, DNA-mediated Source: InterPro
Complete GO annotation...

Keywords - Ligandi

MagnesiumCombined sources, Metal-bindingCombined sources, ZincCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
TransposaseImported
Gene namesi
Name:tnpBImported
OrganismiDeinococcus radioduransImported
Taxonomic identifieri1299 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus

Interactioni

Protein-protein interaction databases

STRINGi243230.DR_2323.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2XM3X-ray2.30A/B/C/D/E/F1-140[»]
2XMAX-ray2.30A/B/E/F1-140[»]
2XO6X-ray1.90A/D1-140[»]
2XQCX-ray1.90A/D1-140[»]
ProteinModelPortaliO83028.
SMRiO83028. Positions 10-137.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO83028.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4109064. Bacteria.
COG1943. LUCA.
HOGENOMiHOG000235392.

Family and domain databases

Gene3Di3.30.70.1290. 1 hit.
InterProiIPR002686. Transposase_17.
[Graphical view]
PfamiPF01797. Y1_Tnp. 1 hit.
[Graphical view]
SMARTiSM01321. Y1_Tnp. 1 hit.
[Graphical view]
SUPFAMiSSF143422. SSF143422. 1 hit.

Sequencei

Sequence statusi: Complete.

O83028-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTYVILPLEM KKGRGYVYQL EYHLIWCVKY RHQVLVGEVA DGLKDILRDI
60 70 80 90 100
AAQNGLEVIT MEVMPDHVHL LLSATPQQAI PDFVKALKGA SARRMFVAYP
110 120 130 140
QLKEKLWGGN LWNPSYCILT VSENTRAQIQ KYIESQHDKE
Length:140
Mass (Da):16,115
Last modified:November 1, 1998 - v1
Checksum:iBADD6C55185ECE0A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB016803 Genomic DNA. Translation: BAA32389.1.
PIRiF75335.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB016803 Genomic DNA. Translation: BAA32389.1.
PIRiF75335.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2XM3X-ray2.30A/B/C/D/E/F1-140[»]
2XMAX-ray2.30A/B/E/F1-140[»]
2XO6X-ray1.90A/D1-140[»]
2XQCX-ray1.90A/D1-140[»]
ProteinModelPortaliO83028.
SMRiO83028. Positions 10-137.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_2323.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4109064. Bacteria.
COG1943. LUCA.
HOGENOMiHOG000235392.

Miscellaneous databases

EvolutionaryTraceiO83028.

Family and domain databases

Gene3Di3.30.70.1290. 1 hit.
InterProiIPR002686. Transposase_17.
[Graphical view]
PfamiPF01797. Y1_Tnp. 1 hit.
[Graphical view]
SMARTiSM01321. Y1_Tnp. 1 hit.
[Graphical view]
SUPFAMiSSF143422. SSF143422. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "IS8301: the second insertion sequence element from Deinococcus radiodurans."
    Narumi I., Islam S., Cherdchu K., Kikuchi M., Watanabe H., Kitayama S., Yamamoto K.
    Submitted (AUG-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: KD8301Imported.
  2. "DNA recognition and the precleavage state during single-stranded DNA transposition in D. radiodurans."
    Hickman A.B., James J.A., Barabas O., Pasternak C., Ton-Hoang B., Chandler M., Sommer S., Dyda F.
    EMBO J. 29:3840-3852(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) IN COMPLEX WITH MAGNESIUM AND ZINC.

Entry informationi

Entry nameiO83028_DEIRD
AccessioniPrimary (citable) accession number: O83028
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: May 11, 2016
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.