Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Transposase

Gene

tnpB

Organism
Deinococcus radiodurans
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi9Magnesium 1Combined sources1
Metal bindingi45Magnesium 2Combined sources1
Metal bindingi45ZincCombined sources1
Metal bindingi49Magnesium 2Combined sources1
Metal bindingi49ZincCombined sources1
Metal bindingi123Magnesium 1Combined sources1

GO - Molecular functioni

GO - Biological processi

  • negative regulation of transposon integration Source: CACAO
  • transposition, DNA-mediated Source: InterPro
Complete GO annotation...

Keywords - Ligandi

MagnesiumCombined sources, Metal-bindingCombined sources, ZincCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
TransposaseImported
Gene namesi
Name:tnpBImported
OrganismiDeinococcus radioduransImported
Taxonomic identifieri1299 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus

Interactioni

Protein-protein interaction databases

STRINGi243230.DR_2323.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2XM3X-ray2.30A/B/C/D/E/F1-140[»]
2XMAX-ray2.30A/B/E/F1-140[»]
2XO6X-ray1.90A/D1-140[»]
2XQCX-ray1.90A/D1-140[»]
ProteinModelPortaliO83028.
SMRiO83028.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO83028.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini17 – 136Y1_TnpInterPro annotationAdd BLAST120

Phylogenomic databases

eggNOGiENOG4109064. Bacteria.
COG1943. LUCA.
HOGENOMiHOG000235392.

Family and domain databases

Gene3Di3.30.70.1290. 1 hit.
InterProiIPR002686. Transposase_17.
[Graphical view]
PfamiPF01797. Y1_Tnp. 1 hit.
[Graphical view]
SMARTiSM01321. Y1_Tnp. 1 hit.
[Graphical view]
SUPFAMiSSF143422. SSF143422. 1 hit.

Sequencei

Sequence statusi: Complete.

O83028-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTYVILPLEM KKGRGYVYQL EYHLIWCVKY RHQVLVGEVA DGLKDILRDI
60 70 80 90 100
AAQNGLEVIT MEVMPDHVHL LLSATPQQAI PDFVKALKGA SARRMFVAYP
110 120 130 140
QLKEKLWGGN LWNPSYCILT VSENTRAQIQ KYIESQHDKE
Length:140
Mass (Da):16,115
Last modified:November 1, 1998 - v1
Checksum:iBADD6C55185ECE0A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB016803 Genomic DNA. Translation: BAA32389.1.
PIRiF75335.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB016803 Genomic DNA. Translation: BAA32389.1.
PIRiF75335.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2XM3X-ray2.30A/B/C/D/E/F1-140[»]
2XMAX-ray2.30A/B/E/F1-140[»]
2XO6X-ray1.90A/D1-140[»]
2XQCX-ray1.90A/D1-140[»]
ProteinModelPortaliO83028.
SMRiO83028.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_2323.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4109064. Bacteria.
COG1943. LUCA.
HOGENOMiHOG000235392.

Miscellaneous databases

EvolutionaryTraceiO83028.

Family and domain databases

Gene3Di3.30.70.1290. 1 hit.
InterProiIPR002686. Transposase_17.
[Graphical view]
PfamiPF01797. Y1_Tnp. 1 hit.
[Graphical view]
SMARTiSM01321. Y1_Tnp. 1 hit.
[Graphical view]
SUPFAMiSSF143422. SSF143422. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiO83028_DEIRD
AccessioniPrimary (citable) accession number: O83028
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: November 2, 2016
This is version 101 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.