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Protein

RNA polymerase sigma factor

Gene

rpoH

Organism
Hydrogenophilus thermoluteolus (Pseudomonas hydrogenothermophila)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, Sigma factorUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factorUniRule annotation
Gene namesi
Name:rpoHImported
OrganismiHydrogenophilus thermoluteolus (Pseudomonas hydrogenothermophila)Imported
Taxonomic identifieri297 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaHydrogenophilaliaHydrogenophilalesHydrogenophilaceaeHydrogenophilus

Structurei

3D structure databases

ProteinModelPortaliO82849
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini98 – 111RNA_pol_sigma70InterPro annotationAdd BLAST14
Domaini271 – 297RNA_pol_sigma70InterPro annotationAdd BLAST27

Sequence similaritiesi

Belongs to the sigma-70 factor family.UniRule annotationSAAS annotation

Family and domain databases

InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR000943 RNA_pol_sigma70
IPR009042 RNA_pol_sigma70_r1_2
IPR007627 RNA_pol_sigma70_r2
IPR007630 RNA_pol_sigma70_r4
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR012759 RNA_pol_sigma_RpoH_proteobac
PfamiView protein in Pfam
PF00140 Sigma70_r1_2, 1 hit
PF04542 Sigma70_r2, 1 hit
PF04545 Sigma70_r4, 1 hit
PRINTSiPR00046 SIGMA70FCT
SUPFAMiSSF88659 SSF88659, 1 hit
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02392 rpoH_proteo, 1 hit
TIGR02937 sigma70-ECF, 1 hit
PROSITEiView protein in PROSITE
PS00715 SIGMA70_1, 1 hit
PS00716 SIGMA70_2, 1 hit

Sequencei

Sequence statusi: Complete.

O82849-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MREATTMLPQ PLASGVHSTA ALPAAWQGSL PSPVSSLSRY IQAVNRFPVL
60 70 80 90 100
SEAEEHELAR RFHETNDLDA ARKLVLANLR YVVMIARQYF GYGLPEADLI
110 120 130 140 150
QEGNVGLLKA VRRFDPYKGV RFITFAAYWI KAEIHDYILR NWRLVKIATT
160 170 180 190 200
KAQKKLFFNL RKLLGSEPLT RAKADAIAET LAVKPEEVAE MHARFAGGDV
210 220 230 240 250
ALEAPIDSDE EADWRAPLAY LPDPSGTPEE AVAEAEAERL SHEGLQQALT
260 270 280 290 300
QLDERSRAIV TRRWLTEKPA TLHELAAEYG ISAERVRQIE AAALKKLRVW

LSPQADAVL
Length:309
Mass (Da):34,514
Last modified:November 1, 1998 - v1
Checksum:i1ABB8B134BFF7F5D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB009991 Genomic DNA Translation: BAA28785.1

Similar proteinsi

Entry informationi

Entry nameiO82849_HYDTE
AccessioniPrimary (citable) accession number: O82849
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: May 23, 2018
This is version 84 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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