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Protein

F-box/kelch-repeat protein At2g29830

Gene

At2g29830

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
F-box/kelch-repeat protein At2g29830
Gene namesi
Ordered Locus Names:At2g29830
ORF Names:T27A16.1
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G29830.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 383383F-box/kelch-repeat protein At2g29830PRO_0000396070Add
BLAST

Proteomic databases

PaxDbiO82373.
PRIDEiO82373.

Expressioni

Gene expression databases

GenevisibleiO82373. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G29830.1.

Structurei

3D structure databases

ProteinModelPortaliO82373.
SMRiO82373. Positions 73-249.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini27 – 7347F-boxPROSITE-ProRule annotationAdd
BLAST
Repeati130 – 17849Kelch 1Add
BLAST
Repeati179 – 22446Kelch 2Add
BLAST
Repeati226 – 27247Kelch 3Add
BLAST
Repeati274 – 31744Kelch 4Add
BLAST
Repeati324 – 37047Kelch 5Add
BLAST

Sequence similaritiesi

Contains 1 F-box domain.PROSITE-ProRule annotation
Contains 5 Kelch repeats.Curated

Keywords - Domaini

Kelch repeat, Repeat

Phylogenomic databases

eggNOGiKOG1072. Eukaryota.
ENOG4110X8D. LUCA.
HOGENOMiHOG000242515.
OMAiALIPRCH.
PhylomeDBiO82373.

Family and domain databases

Gene3Di2.120.10.80. 1 hit.
InterProiIPR001810. F-box_dom.
IPR015915. Kelch-typ_b-propeller.
IPR006652. Kelch_1.
[Graphical view]
PfamiPF00646. F-box. 1 hit.
PF01344. Kelch_1. 2 hits.
[Graphical view]
SMARTiSM00256. FBOX. 1 hit.
SM00612. Kelch. 2 hits.
[Graphical view]
SUPFAMiSSF81383. SSF81383. 1 hit.
PROSITEiPS50181. FBOX. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O82373-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVVLSEIPGD PNEDNQNENP QEEVENLPIL LQLPEELIAS IVALIPRCHY
60 70 80 90 100
PSLSLVSRAF RHLITSQELY VARSNLGFTE PVLYALIGFQ AYTRPSWFFL
110 120 130 140 150
RRSNFPLQLH RIRSLPPMLS GAAVVTIDYK MYVMGGCIGY NHPASSNVIV
160 170 180 190 200
IDCRFHTWKY LPDMKRARCR AATGIIDGRI YVIGGCKKQD ADWVEVFDVT
210 220 230 240 250
TQSWETVPSE CPNDANENGE FITYVVMQGR LFILDLECCF SYEPVQGLWE
260 270 280 290 300
SWDDGSELMR FWHSSSSCVV GDLLYALDLT CALEHPIVVY YPNELVWRPV
310 320 330 340 350
MGVDTAHLPI LTEYTSTLAN FDGKLVILGG GDCSESSSEI WCVEIALETR
360 370 380
QGDQIWGVVK SVSIVSRDLP MRHVIELCRT VMV
Length:383
Mass (Da):43,283
Last modified:November 1, 1998 - v1
Checksum:i499856D81A5A0063
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005496 Genomic DNA. Translation: AAC35218.1.
CP002685 Genomic DNA. Translation: AEC08309.1.
AY464611 mRNA. No translation available.
PIRiB84701.
RefSeqiNP_180544.1. NM_128537.2.
UniGeneiAt.49284.

Genome annotation databases

EnsemblPlantsiAT2G29830.1; AT2G29830.1; AT2G29830.
GeneIDi817533.
GrameneiAT2G29830.1; AT2G29830.1; AT2G29830.
KEGGiath:AT2G29830.

Cross-referencesi

Web resourcesi

PlantsUBQ

A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005496 Genomic DNA. Translation: AAC35218.1.
CP002685 Genomic DNA. Translation: AEC08309.1.
AY464611 mRNA. No translation available.
PIRiB84701.
RefSeqiNP_180544.1. NM_128537.2.
UniGeneiAt.49284.

3D structure databases

ProteinModelPortaliO82373.
SMRiO82373. Positions 73-249.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G29830.1.

Proteomic databases

PaxDbiO82373.
PRIDEiO82373.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G29830.1; AT2G29830.1; AT2G29830.
GeneIDi817533.
GrameneiAT2G29830.1; AT2G29830.1; AT2G29830.
KEGGiath:AT2G29830.

Organism-specific databases

TAIRiAT2G29830.

Phylogenomic databases

eggNOGiKOG1072. Eukaryota.
ENOG4110X8D. LUCA.
HOGENOMiHOG000242515.
OMAiALIPRCH.
PhylomeDBiO82373.

Miscellaneous databases

PROiO82373.

Gene expression databases

GenevisibleiO82373. AT.

Family and domain databases

Gene3Di2.120.10.80. 1 hit.
InterProiIPR001810. F-box_dom.
IPR015915. Kelch-typ_b-propeller.
IPR006652. Kelch_1.
[Graphical view]
PfamiPF00646. F-box. 1 hit.
PF01344. Kelch_1. 2 hits.
[Graphical view]
SMARTiSM00256. FBOX. 1 hit.
SM00612. Kelch. 2 hits.
[Graphical view]
SUPFAMiSSF81383. SSF81383. 1 hit.
PROSITEiPS50181. FBOX. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2 reveals numerous transcript variants."
    Xiao Y.-L., Smith S.R., Ishmael N., Redman J.C., Kumar N., Monaghan E.L., Ayele M., Haas B.J., Wu H.C., Town C.D.
    Plant Physiol. 139:1323-1337(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-234.
    Strain: cv. Columbia.

Entry informationi

Entry nameiFK128_ARATH
AccessioniPrimary (citable) accession number: O82373
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 10, 2010
Last sequence update: November 1, 1998
Last modified: May 11, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.