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Protein

Pentatricopeptide repeat-containing protein At2g46050, mitochondrial

Gene

PCMP-E39

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

  • mitochondrial mRNA modification Source: TAIR
  • mitochondrial RNA processing Source: TAIR
  • RNA modification Source: GO_Central

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At2g46050, mitochondrial
Gene namesi
Name:PCMP-E39
Ordered Locus Names:At2g46050
ORF Names:T3F17.30
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G46050
TAIRilocus:2062939 AT2G46050

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 109MitochondrionSequence analysisAdd BLAST109
ChainiPRO_0000356062110 – 590Pentatricopeptide repeat-containing protein At2g46050, mitochondrialAdd BLAST481

Proteomic databases

PaxDbiO82363
PRIDEiO82363

Expressioni

Gene expression databases

ExpressionAtlasiO82363 differential
GenevisibleiO82363 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G46050.1

Structurei

3D structure databases

ProteinModelPortaliO82363
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati141 – 175PPR 1Add BLAST35
Repeati176 – 206PPR 2Add BLAST31
Repeati207 – 241PPR 3Add BLAST35
Repeati244 – 266PPR 4Add BLAST23
Repeati275 – 305PPR 5Add BLAST31
Repeati306 – 340PPR 6Add BLAST35
Repeati341 – 375PPR 7Add BLAST35
Repeati376 – 406PPR 8Add BLAST31
Repeati407 – 437PPR 9Add BLAST31
Repeati441 – 471PPR 10Add BLAST31
Repeati477 – 507PPR 11Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni512 – 588Type E motifAdd BLAST77

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi31 – 35Poly-Ser5

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000242240
InParanoidiO82363
OMAiFLGACRM
OrthoDBiEOG0936057Y
PhylomeDBiO82363

Family and domain databases

Gene3Di1.25.40.10, 4 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 7 hits
PF13041 PPR_2, 1 hit
TIGRFAMsiTIGR00756 PPR, 6 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 12 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O82363-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFTFLRSTR IFLANHQNHL SSLQNIRTIP SSSSSPVAIS SVSKLSASLD
60 70 80 90 100
HLSDVKQEHG FMVKQGIYNS LFLQNKLLQA YTKIREFDDA DKLFDEMPLR
110 120 130 140 150
NIVTWNILIH GVIQRDGDTN HRAHLGFCYL SRILFTDVSL DHVSFMGLIR
160 170 180 190 200
LCTDSTNMKA GIQLHCLMVK QGLESSCFPS TSLVHFYGKC GLIVEARRVF
210 220 230 240 250
EAVLDRDLVL WNALVSSYVL NGMIDEAFGL LKLMGSDKNR FRGDYFTFSS
260 270 280 290 300
LLSACRIEQG KQIHAILFKV SYQFDIPVAT ALLNMYAKSN HLSDARECFE
310 320 330 340 350
SMVVRNVVSW NAMIVGFAQN GEGREAMRLF GQMLLENLQP DELTFASVLS
360 370 380 390 400
SCAKFSAIWE IKQVQAMVTK KGSADFLSVA NSLISSYSRN GNLSEALLCF
410 420 430 440 450
HSIREPDLVS WTSVIGALAS HGFAEESLQM FESMLQKLQP DKITFLEVLS
460 470 480 490 500
ACSHGGLVQE GLRCFKRMTE FYKIEAEDEH YTCLIDLLGR AGFIDEASDV
510 520 530 540 550
LNSMPTEPST HALAAFTGGC NIHEKRESMK WGAKKLLEIE PTKPVNYSIL
560 570 580 590
SNAYVSEGHW NQAALLRKRE RRNCYNPKTP GCSWLGDYSI
Length:590
Mass (Da):66,335
Last modified:November 1, 1998 - v1
Checksum:i9EA5CBE81B081C5E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005397 Genomic DNA Translation: AAC62898.1
CP002685 Genomic DNA Translation: AEC10636.1
PIRiB84898
RefSeqiNP_182129.1, NM_130168.1
UniGeneiAt.65051

Genome annotation databases

EnsemblPlantsiAT2G46050.1; AT2G46050.1; AT2G46050
GeneIDi819213
GrameneiAT2G46050.1; AT2G46050.1; AT2G46050
KEGGiath:AT2G46050

Similar proteinsi

Entry informationi

Entry nameiPP203_ARATH
AccessioniPrimary (citable) accession number: O82363
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: November 1, 1998
Last modified: May 23, 2018
This is version 100 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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