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Protein

Pentatricopeptide repeat-containing protein At2g46050, mitochondrial

Gene

PCMP-E39

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At2g46050, mitochondrial
Gene namesi
Name:PCMP-E39
Ordered Locus Names:At2g46050
ORF Names:T3F17.30
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G46050.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 109109MitochondrionSequence analysisAdd
BLAST
Chaini110 – 590481Pentatricopeptide repeat-containing protein At2g46050, mitochondrialPRO_0000356062Add
BLAST

Proteomic databases

PaxDbiO82363.
PRIDEiO82363.

Expressioni

Gene expression databases

GenevisibleiO82363. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G46050.1.

Structurei

3D structure databases

ProteinModelPortaliO82363.
SMRiO82363. Positions 62-559.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati141 – 17535PPR 1Add
BLAST
Repeati176 – 20631PPR 2Add
BLAST
Repeati207 – 24135PPR 3Add
BLAST
Repeati244 – 26623PPR 4Add
BLAST
Repeati275 – 30531PPR 5Add
BLAST
Repeati306 – 34035PPR 6Add
BLAST
Repeati341 – 37535PPR 7Add
BLAST
Repeati376 – 40631PPR 8Add
BLAST
Repeati407 – 43731PPR 9Add
BLAST
Repeati441 – 47131PPR 10Add
BLAST
Repeati477 – 50731PPR 11Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni512 – 58877Type E motifAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi31 – 355Poly-Ser

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated
Contains 11 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000242240.
InParanoidiO82363.
OMAiFLGACRM.
PhylomeDBiO82363.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 7 hits.
PF13041. PPR_2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 6 hits.
PROSITEiPS51375. PPR. 12 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O82363-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFTFLRSTR IFLANHQNHL SSLQNIRTIP SSSSSPVAIS SVSKLSASLD
60 70 80 90 100
HLSDVKQEHG FMVKQGIYNS LFLQNKLLQA YTKIREFDDA DKLFDEMPLR
110 120 130 140 150
NIVTWNILIH GVIQRDGDTN HRAHLGFCYL SRILFTDVSL DHVSFMGLIR
160 170 180 190 200
LCTDSTNMKA GIQLHCLMVK QGLESSCFPS TSLVHFYGKC GLIVEARRVF
210 220 230 240 250
EAVLDRDLVL WNALVSSYVL NGMIDEAFGL LKLMGSDKNR FRGDYFTFSS
260 270 280 290 300
LLSACRIEQG KQIHAILFKV SYQFDIPVAT ALLNMYAKSN HLSDARECFE
310 320 330 340 350
SMVVRNVVSW NAMIVGFAQN GEGREAMRLF GQMLLENLQP DELTFASVLS
360 370 380 390 400
SCAKFSAIWE IKQVQAMVTK KGSADFLSVA NSLISSYSRN GNLSEALLCF
410 420 430 440 450
HSIREPDLVS WTSVIGALAS HGFAEESLQM FESMLQKLQP DKITFLEVLS
460 470 480 490 500
ACSHGGLVQE GLRCFKRMTE FYKIEAEDEH YTCLIDLLGR AGFIDEASDV
510 520 530 540 550
LNSMPTEPST HALAAFTGGC NIHEKRESMK WGAKKLLEIE PTKPVNYSIL
560 570 580 590
SNAYVSEGHW NQAALLRKRE RRNCYNPKTP GCSWLGDYSI
Length:590
Mass (Da):66,335
Last modified:November 1, 1998 - v1
Checksum:i9EA5CBE81B081C5E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005397 Genomic DNA. Translation: AAC62898.1.
CP002685 Genomic DNA. Translation: AEC10636.1.
PIRiB84898.
RefSeqiNP_182129.1. NM_130168.1.
UniGeneiAt.65051.

Genome annotation databases

EnsemblPlantsiAT2G46050.1; AT2G46050.1; AT2G46050.
GeneIDi819213.
GrameneiAT2G46050.1; AT2G46050.1; AT2G46050.
KEGGiath:AT2G46050.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005397 Genomic DNA. Translation: AAC62898.1.
CP002685 Genomic DNA. Translation: AEC10636.1.
PIRiB84898.
RefSeqiNP_182129.1. NM_130168.1.
UniGeneiAt.65051.

3D structure databases

ProteinModelPortaliO82363.
SMRiO82363. Positions 62-559.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G46050.1.

Proteomic databases

PaxDbiO82363.
PRIDEiO82363.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G46050.1; AT2G46050.1; AT2G46050.
GeneIDi819213.
GrameneiAT2G46050.1; AT2G46050.1; AT2G46050.
KEGGiath:AT2G46050.

Organism-specific databases

TAIRiAT2G46050.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000242240.
InParanoidiO82363.
OMAiFLGACRM.
PhylomeDBiO82363.

Miscellaneous databases

PROiO82363.

Gene expression databases

GenevisibleiO82363. AT.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 7 hits.
PF13041. PPR_2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 6 hits.
PROSITEiPS51375. PPR. 12 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants."
    Aubourg S., Boudet N., Kreis M., Lecharny A.
    Plant Mol. Biol. 42:603-613(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.
  4. "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis."
    Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I.
    Plant Cell 16:2089-2103(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiPP203_ARATH
AccessioniPrimary (citable) accession number: O82363
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: November 1, 1998
Last modified: February 17, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.