Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Ethylene-responsive transcription factor CRF5

Gene

CRF5

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).By similarity1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi98 – 155AP2/ERFPROSITE-ProRule annotationAdd BLAST58

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • cotyledon development Source: TAIR
  • cytokinin-activated signaling pathway Source: UniProtKB-KW
  • embryo development ending in seed dormancy Source: TAIR
  • ethylene-activated signaling pathway Source: UniProtKB-KW
  • leaf development Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
  • transcription factor import into nucleus Source: TAIR

Keywordsi

Molecular functionActivator, DNA-binding
Biological processCytokinin signaling pathway, Ethylene signaling pathway, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor CRF5
Alternative name(s):
Protein CYTOKININ RESPONSE FACTOR 5
Gene namesi
Name:CRF5
Synonyms:ERF068
Ordered Locus Names:At2g46310
ORF Names:T3F17.4
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G46310.
TAIRilocus:2062954. AT2G46310.

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002979201 – 294Ethylene-responsive transcription factor CRF5Add BLAST294

Proteomic databases

PaxDbiO82339.

Expressioni

Inductioni

By cytokinins.1 Publication

Gene expression databases

GenevisibleiO82339. AT.

Interactioni

Binary interactionsi

Show more details

Protein-protein interaction databases

BioGridi4574. 13 interactors.
IntActiO82339. 13 interactors.
STRINGi3702.AT2G46310.1.

Structurei

3D structure databases

ProteinModelPortaliO82339.
SMRiO82339.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG410JT8X. Eukaryota.
ENOG411082V. LUCA.
HOGENOMiHOG000237664.
InParanoidiO82339.
OMAiSHNDETE.
OrthoDBiEOG09360QU2.
PhylomeDBiO82339.

Family and domain databases

CDDicd00018. AP2. 1 hit.
Gene3Di3.30.730.10. 1 hit.
InterProiView protein in InterPro
IPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
PfamiView protein in Pfam
PF00847. AP2. 1 hit.
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiView protein in SMART
SM00380. AP2. 1 hit.
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiView protein in PROSITE
PS51032. AP2_ERF. 1 hit.

Sequencei

Sequence statusi: Complete.

O82339-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSRVRKSKY TVHRKITSTP FDGFPKIVKI IVTDPCATDS SSDEENDNKS
60 70 80 90 100
VAPRVKRYVD EIRFCDEDDE PKPARKAKKK SPAAAAENGG DLVKSVVKYR
110 120 130 140 150
GVRQRPWGKF AAEIRDPSSR TRLWLGTFAT AEEAAIGYDR AAIRIKGHNA
160 170 180 190 200
QTNFLTPPPS PTTEVLPETP VIDLETVSGC DSARESQISL CSPTSVLRFS
210 220 230 240 250
HNDETEYRTE PTEEQNPFFL PDLFRSGDYF WDSEITPDPL FLDEFHQSLL
260 270 280 290
PNINNNNTVC DKDTNLSDSF PLGVIGDFSS WDVDEFFQDH LLDK
Length:294
Mass (Da):33,156
Last modified:November 1, 1998 - v1
Checksum:i5CBE0C513838C9E1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005397 Genomic DNA. Translation: AAC62875.1.
CP002685 Genomic DNA. Translation: AEC10675.1.
AY074638 mRNA. Translation: AAL69454.1.
BT003121 mRNA. Translation: AAO24553.1.
AK227661 mRNA. Translation: BAE99648.1.
PIRiC84901.
RefSeqiNP_182154.1. NM_130194.5.
UniGeneiAt.37025.

Genome annotation databases

EnsemblPlantsiAT2G46310.1; AT2G46310.1; AT2G46310.
GeneIDi819239.
GrameneiAT2G46310.1; AT2G46310.1; AT2G46310.
KEGGiath:AT2G46310.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiCRF5_ARATH
AccessioniPrimary (citable) accession number: O82339
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 21, 2007
Last sequence update: November 1, 1998
Last modified: April 12, 2017
This is version 106 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families