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Protein
Submitted name:

Putative retroelement pol polyprotein

Gene

At2g14930

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative retroelement pol polyproteinImported
Gene namesi
Ordered Locus Names:At2g14930Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Structurei

3D structure databases

ProteinModelPortaliO82331.
SMRiO82331. Positions 446-669.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini269 – 28214CCHC-typeInterPro annotationAdd
BLAST
Domaini499 – 666168Integrase catalyticInterPro annotationAdd
BLAST

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
InterProiIPR025724. GAG-pre-integrase_dom.
IPR001584. Integrase_cat-core.
IPR012337. RNaseH-like_dom.
IPR013103. RVT_2.
IPR029472. UBN2_3.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF13976. gag_pre-integrs. 1 hit.
PF14244. Retrotran_gag_3. 1 hit.
PF00665. rve. 1 hit.
PF07727. RVT_2. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
PROSITEiPS50994. INTEGRASE. 1 hit.
PS50158. ZF_CCHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O82331-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDQSMDLYTL PSLNISNCVT VKLTDRNYIL WKSQFESFLS GQGLLGFVNG
60 70 80 90 100
AYAAPTGTVS GPQDAGVTEA IPNPDYQAWF RSDQVVMSED ILSVVVGSKT
110 120 130 140 150
SHEVWMNLAK HFNRISSSRI FELQRRLHSL SKEGKTMEEY LRYLKTICDQ
160 170 180 190 200
LASVGSPVAE KMKIFAMVHG LTREYEPLIT SLEGTLDAFP GPSYEDVVYR
210 220 230 240 250
LKNFDDRLQG YTVTDVSPHL AFNTFRSSNR GRGGRNNRGK GNFSTRGRGF
260 270 280 290 300
QQQFSSSSSS VSASEKPMCQ ICGKRGHYAL QCWHRFDDSY QHSEAAAAAF
310 320 330 340 350
SALHITDVSD DSGWVPDSAA TAHITNNSSR LQQMQPYLGN DTVMASDGNF
360 370 380 390 400
LPITHIGSAN LPSTSGNLPL KDVLVCPNIA KSLLSVSKLT KDYPCSFTFD
410 420 430 440 450
ADGVLVKDKA TCKVLTKGSS TSEGLYKLEN PKFQMFYSTR QVKATDEVWH
460 470 480 490 500
MRLGHPNPQV LQLLANKKAI QINKSTSKMC ESCRLGKSSR LPFIASDFIA
510 520 530 540 550
SRPLERVHCD LWGPAPVSSI QGFQYYVIFI DNRSRFCWFY PLKHKSDFCS
560 570 580 590 600
LFMKFQSFVE NLLQTKIGTF QSDGGGEFTS NRFLQHLQES GIQHYISCPH
610 620 630 640 650
TPQQNGLAER KHRQLTERGL TLMFQSKAPQ RFWVEAFFTA NFLSNLLPTS
660 670 680 690 700
ALDSSTTPYQ VLFGKAPDYS ALRTFGCACF PTLRAYARNK FDPRSLKCIF
710 720 730 740 750
LGYTEKYKGY RCFFPPTNRV YLSRHVLFDE SSFPFIDTYT SLQHPSPTPM
760 770 780 790 800
FDAWLKSFPS SSSPLENDQT AGFNSGASVP VITAQQTQPI LSLKDGPNIL
810 820 830 840 850
LPEGEITVSS NNQDIEDEPI CVTPLQTLSS EDNAKSSETL SMGSEECSEC
860 870 880 890 900
TASFDLDPIG NNALSSSPRH DQLTSSIPRA ATESTHPMTT RLKKGIIKLN
910 920 930 940 950
QRVKLNVDGS LDKYKARLVA QGFKQEEGID YLETYSPVVR SATVRAVLHL
960 970 980 990 1000
STIMNWELKQ MDVKNGFLHG DLTETVYMKQ PAGFIDKAHP DHVCLLHKAL
1010 1020 1030 1040 1050
YGLKQAPRAW FDKFSKFLLS FGFVCSMSDP SLFVCVKNKD VIMLLLYVDD
1060 1070 1080 1090 1100
MVITGNSSKL LSSLLSELNK QFKMKDLGRL SYFLGIQAQF HSQGLFLSQQ
1110 1120 1130 1140
KYAEDLLATA AMSNCSPVAT PLPLQPERTP NQTELFDNPS YFRSLAGKL
Length:1,149
Mass (Da):128,377
Last modified:November 1, 1998 - v1
Checksum:iA5DA05137EA63DF2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005396 Genomic DNA. Translation: AAC61290.1.
PIRiB84523.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005396 Genomic DNA. Translation: AAC61290.1.
PIRiB84523.

3D structure databases

ProteinModelPortaliO82331.
SMRiO82331. Positions 446-669.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
InterProiIPR025724. GAG-pre-integrase_dom.
IPR001584. Integrase_cat-core.
IPR012337. RNaseH-like_dom.
IPR013103. RVT_2.
IPR029472. UBN2_3.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF13976. gag_pre-integrs. 1 hit.
PF14244. Retrotran_gag_3. 1 hit.
PF00665. rve. 1 hit.
PF07727. RVT_2. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
PROSITEiPS50994. INTEGRASE. 1 hit.
PS50158. ZF_CCHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Rounsley S.D., Lin X., Kaul S., Shea T.P., Fujii C.Y., Mason T.M., Shen M., Ronning C.M., Fraser C.M., Somerville C.R., Venter J.C.
    Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. Town C.D., Kaul S.
    Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiO82331_ARATH
AccessioniPrimary (citable) accession number: O82331
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: May 11, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.