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Protein

UPF0057 membrane protein At2g24040

Gene

At2g24040

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0057 membrane protein At2g24040
Gene namesi
Ordered Locus Names:At2g24040
ORF Names:T29E15.24
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G24040.
TAIRilocus:2061501. AT2G24040.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei4 – 24HelicalSequence analysisAdd BLAST21
Transmembranei33 – 53HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001939751 – 75UPF0057 membrane protein At2g24040Add BLAST75

Proteomic databases

PaxDbiO82232.

Expressioni

Gene expression databases

ExpressionAtlasiO82232. baseline and differential.
GenevisibleiO82232. AT.

Interactioni

Protein-protein interaction databases

BioGridi2290. 2 interactors.
IntActiO82232. 1 interactor.
STRINGi3702.AT2G24040.1.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0057 (PMP3) family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG1773. Eukaryota.
COG0401. LUCA.
HOGENOMiHOG000274029.
InParanoidiO82232.
OMAiCEIFIAI.
OrthoDBiEOG093610D9.
PhylomeDBiO82232.

Family and domain databases

InterProiView protein in InterPro
IPR000612. PMP3.
PANTHERiPTHR21659. PTHR21659. 1 hit.
PfamiView protein in Pfam
PF01679. Pmp3. 1 hit.
PROSITEiView protein in PROSITE
PS01309. UPF0057. 1 hit.

Sequencei

Sequence statusi: Complete.

O82232-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSCELCCE IFIAILLPPV GVCLRHGCCT VEFFICLILT CLGYLPGIIY
60 70
AIYAICFLHR DEYFDEYRRP IYYVA
Length:75
Mass (Da):8,625
Last modified:November 1, 1998 - v1
Checksum:iCE4E2D4F1DEBDC1F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005170 Genomic DNA. Translation: AAC63672.1.
CP002685 Genomic DNA. Translation: AEC07522.1.
BT012202 mRNA. Translation: AAS76689.1.
BT012367 mRNA. Translation: AAS88757.1.
PIRiH84631.
RefSeqiNP_179982.1. NM_127966.5.
UniGeneiAt.39209.

Genome annotation databases

EnsemblPlantsiAT2G24040.1; AT2G24040.1; AT2G24040.
GeneIDi816938.
GrameneiAT2G24040.1; AT2G24040.1; AT2G24040.
KEGGiath:AT2G24040.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRC22_ARATH
AccessioniPrimary (citable) accession number: O82232
Secondary accession number(s): Q53XD6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 14, 2001
Last sequence update: November 1, 1998
Last modified: April 12, 2017
This is version 88 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries