Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

UPF0057 membrane protein At2g24040

Gene

At2g24040

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0057 membrane protein At2g24040
Gene namesi
Ordered Locus Names:At2g24040
ORF Names:T29E15.24
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G24040.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei4 – 2421HelicalSequence analysisAdd
BLAST
Transmembranei33 – 5321HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7575UPF0057 membrane protein At2g24040PRO_0000193975Add
BLAST

Proteomic databases

PaxDbiO82232.

Expressioni

Gene expression databases

ExpressionAtlasiO82232. baseline and differential.
GenevisibleiO82232. AT.

Interactioni

Protein-protein interaction databases

BioGridi2290. 2 interactions.
IntActiO82232. 1 interaction.
STRINGi3702.AT2G24040.1.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0057 (PMP3) family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG1773. Eukaryota.
COG0401. LUCA.
HOGENOMiHOG000274029.
InParanoidiO82232.
OMAiCEIFIAI.
OrthoDBiEOG093610D9.
PhylomeDBiO82232.

Family and domain databases

InterProiIPR000612. PMP3.
[Graphical view]
PANTHERiPTHR21659. PTHR21659. 1 hit.
PfamiPF01679. Pmp3. 1 hit.
[Graphical view]
PROSITEiPS01309. UPF0057. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O82232-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSCELCCE IFIAILLPPV GVCLRHGCCT VEFFICLILT CLGYLPGIIY
60 70
AIYAICFLHR DEYFDEYRRP IYYVA
Length:75
Mass (Da):8,625
Last modified:November 1, 1998 - v1
Checksum:iCE4E2D4F1DEBDC1F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005170 Genomic DNA. Translation: AAC63672.1.
CP002685 Genomic DNA. Translation: AEC07522.1.
BT012202 mRNA. Translation: AAS76689.1.
BT012367 mRNA. Translation: AAS88757.1.
PIRiH84631.
RefSeqiNP_179982.1. NM_127966.4.
UniGeneiAt.39209.

Genome annotation databases

EnsemblPlantsiAT2G24040.1; AT2G24040.1; AT2G24040.
GeneIDi816938.
GrameneiAT2G24040.1; AT2G24040.1; AT2G24040.
KEGGiath:AT2G24040.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005170 Genomic DNA. Translation: AAC63672.1.
CP002685 Genomic DNA. Translation: AEC07522.1.
BT012202 mRNA. Translation: AAS76689.1.
BT012367 mRNA. Translation: AAS88757.1.
PIRiH84631.
RefSeqiNP_179982.1. NM_127966.4.
UniGeneiAt.39209.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi2290. 2 interactions.
IntActiO82232. 1 interaction.
STRINGi3702.AT2G24040.1.

Proteomic databases

PaxDbiO82232.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G24040.1; AT2G24040.1; AT2G24040.
GeneIDi816938.
GrameneiAT2G24040.1; AT2G24040.1; AT2G24040.
KEGGiath:AT2G24040.

Organism-specific databases

TAIRiAT2G24040.

Phylogenomic databases

eggNOGiKOG1773. Eukaryota.
COG0401. LUCA.
HOGENOMiHOG000274029.
InParanoidiO82232.
OMAiCEIFIAI.
OrthoDBiEOG093610D9.
PhylomeDBiO82232.

Miscellaneous databases

PROiO82232.

Gene expression databases

ExpressionAtlasiO82232. baseline and differential.
GenevisibleiO82232. AT.

Family and domain databases

InterProiIPR000612. PMP3.
[Graphical view]
PANTHERiPTHR21659. PTHR21659. 1 hit.
PfamiPF01679. Pmp3. 1 hit.
[Graphical view]
PROSITEiPS01309. UPF0057. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRC22_ARATH
AccessioniPrimary (citable) accession number: O82232
Secondary accession number(s): Q53XD6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 14, 2001
Last sequence update: November 1, 1998
Last modified: September 7, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.