Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Copia-like retroelement pol polyprotein

Gene

At2g19840

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Protein family/group databases

MEROPSiA11.002

Names & Taxonomyi

Protein namesi
Submitted name:
Copia-like retroelement pol polyproteinImported
Gene namesi
Ordered Locus Names:At2g19840Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

PTM / Processingi

Proteomic databases

PRIDEiO82196

Expressioni

Gene expression databases

ExpressionAtlasiO82196 differential

Structurei

3D structure databases

ProteinModelPortaliO82196
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini208 – 221CCHC-typeInterPro annotationAdd BLAST14
Domaini274 – 453Integrase catalyticInterPro annotationAdd BLAST180

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili100 – 120Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis, Zinc-fingerPROSITE-ProRule annotation

Family and domain databases

Gene3Di3.30.420.10, 1 hit
InterProiView protein in InterPro
IPR001584 Integrase_cat-core
IPR012337 RNaseH-like_sf
IPR036397 RNaseH_sf
IPR013103 RVT_2
IPR001878 Znf_CCHC
IPR036875 Znf_CCHC_sf
PfamiView protein in Pfam
PF00665 rve, 1 hit
PF07727 RVT_2, 1 hit
SMARTiView protein in SMART
SM00343 ZnF_C2HC, 1 hit
SUPFAMiSSF53098 SSF53098, 1 hit
SSF57756 SSF57756, 1 hit
PROSITEiView protein in PROSITE
PS50994 INTEGRASE, 1 hit
PS50158 ZF_CCHC, 1 hit

Sequencei

Sequence statusi: Complete.

O82196-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLKDALVER APLPPLKEED ESDPAKKKQR IEEEKARIDQ DEKAMDMIFI
60 70 80 90 100
NVGDKVLRNI ENSKTAAEAW ATLDKLYLVK SLPNRVYLQL KVYNYRMQDS
110 120 130 140 150
KTLEENVDEF QKMISDLNNL QIQVPDEVQA ILILSALPDS YDMLKETLKY
160 170 180 190 200
GREGIKLDDV ISAAKSKELE LRDSSGGSRP VGEGLYVRGK SQARGSDGPK
210 220 230 240 250
STEGKKVCWI CGKEGHFKRQ CYKWLEKNKA NGAGETALVK DDAQDLVGLV
260 270 280 290 300
ASEVNMSEGK DDQEEWIMDT GCSFHMTPRK EYLMDFVEAK SGKVRMANNS
310 320 330 340 350
FSEVKGIGKV KFIKKDGTND WSRKVWVYFL KTKDEAFASF TEWKKMVETQ
360 370 380 390 400
SERKLKHLRT DNGLEFCNHK FDEVCKKEGI VRHRTCTYTP QQNGVAERLN
410 420 430 440 450
RTIMNKVRSM LSESGLDKKF WAKAASTAVY LINRSPSSSI ENKIPEELWT
460 470 480 490 500
SAVPNFSGLK RFGCVVYVYS QEGKLDPRAK KGVFVGYPNG VKGFRVWMIE
510 520 530 540 550
EERCSISRNV VFREDVMYKD ILNQSTSGMS FDFPLATNRI PSFECAGNRK
560 570 580 590 600
EDEISVQGGV SDDDTKQSSE ESPISTGSSG QNSGQRTYQI ARDKPKRQTK
610 620 630 640 650
IPDKLRDYEL NEEVLDEIAG YAYMITEDGG NPEPNDYQKA LQDSDYKMWL
660 670 680 690 700
KAVDEEIESL LKNNTWVLVN RDQFQKPIGC KWVFKRKSGI VGVEKPRFKA
710 720 730 740 750
RLVVKGYSQK EGIDYQEIFS PVVKHVSIRL LLSMVTHCDM ELQQMDVKTA
760 770 780 790 800
FLHGYLDETI YIEQPEGYVH KRYPDKVCLL KRSLYGLRQS PRQWNNRFNE
810 820 830 840 850
FMQKIGYERS KYDSCVYFKE LQSGEYIYLL LYVDDILIAS RDKRTVCDLK
860 870 880 890 900
ALLNSEFEMK DLGDAKKILG MEIVRDRKAG TMSISQEGYL LKVLGNFGMD
910 920 930 940 950
QAKPVFTPMG AHFKLKPATD EEVMRQSEVM RAVPYQSAVG SLMYSMIGTR
960 970 980 990 1000
PDLAHSVGLV CRFMSKPLKE HWQAVKWILR YIRGSIDRKL CYKNEGELIL
1010 1020 1030 1040 1050
EGYCDSDYAA DKEGRRSTSG VKVVALSSTE AEYMALTDGA KEAIWLKGHV
1060 1070 1080 1090 1100
SELGFVQKTV NIHCDSQSAI ALAKNAVYHE RTKHIDVKYH FIRDLVNNGE
1110 1120 1130
VQVLKIDTED NPADIFTKVL PVSKFQDALE LLRVSQN
Length:1,137
Mass (Da):129,775
Last modified:November 1, 1998 - v1
Checksum:i7265DF09C6E1025C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005169 Genomic DNA Translation: AAC62132.1
PIRiG84581

Entry informationi

Entry nameiO82196_ARATH
AccessioniPrimary (citable) accession number: O82196
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: May 23, 2018
This is version 92 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Cookie policy

We would like to use anonymized google analytics cookies to gather statistics on how uniprot.org is used in aggregate. Learn more

UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health