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Protein
Submitted name:

Copia-like retroelement pol polyprotein

Gene

At2g19840

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Copia-like retroelement pol polyproteinImported
Gene namesi
Ordered Locus Names:At2g19840Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Structurei

3D structure databases

ProteinModelPortaliO82196.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini208 – 22114CCHC-typeInterPro annotationAdd
BLAST
Domaini274 – 453180Integrase catalyticInterPro annotationAdd
BLAST

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR001584. Integrase_cat-core.
IPR012337. RNaseH-like_dom.
IPR013103. RVT_2.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF00665. rve. 1 hit.
PF07727. RVT_2. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50994. INTEGRASE. 1 hit.
PS50158. ZF_CCHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O82196-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLKDALVER APLPPLKEED ESDPAKKKQR IEEEKARIDQ DEKAMDMIFI
60 70 80 90 100
NVGDKVLRNI ENSKTAAEAW ATLDKLYLVK SLPNRVYLQL KVYNYRMQDS
110 120 130 140 150
KTLEENVDEF QKMISDLNNL QIQVPDEVQA ILILSALPDS YDMLKETLKY
160 170 180 190 200
GREGIKLDDV ISAAKSKELE LRDSSGGSRP VGEGLYVRGK SQARGSDGPK
210 220 230 240 250
STEGKKVCWI CGKEGHFKRQ CYKWLEKNKA NGAGETALVK DDAQDLVGLV
260 270 280 290 300
ASEVNMSEGK DDQEEWIMDT GCSFHMTPRK EYLMDFVEAK SGKVRMANNS
310 320 330 340 350
FSEVKGIGKV KFIKKDGTND WSRKVWVYFL KTKDEAFASF TEWKKMVETQ
360 370 380 390 400
SERKLKHLRT DNGLEFCNHK FDEVCKKEGI VRHRTCTYTP QQNGVAERLN
410 420 430 440 450
RTIMNKVRSM LSESGLDKKF WAKAASTAVY LINRSPSSSI ENKIPEELWT
460 470 480 490 500
SAVPNFSGLK RFGCVVYVYS QEGKLDPRAK KGVFVGYPNG VKGFRVWMIE
510 520 530 540 550
EERCSISRNV VFREDVMYKD ILNQSTSGMS FDFPLATNRI PSFECAGNRK
560 570 580 590 600
EDEISVQGGV SDDDTKQSSE ESPISTGSSG QNSGQRTYQI ARDKPKRQTK
610 620 630 640 650
IPDKLRDYEL NEEVLDEIAG YAYMITEDGG NPEPNDYQKA LQDSDYKMWL
660 670 680 690 700
KAVDEEIESL LKNNTWVLVN RDQFQKPIGC KWVFKRKSGI VGVEKPRFKA
710 720 730 740 750
RLVVKGYSQK EGIDYQEIFS PVVKHVSIRL LLSMVTHCDM ELQQMDVKTA
760 770 780 790 800
FLHGYLDETI YIEQPEGYVH KRYPDKVCLL KRSLYGLRQS PRQWNNRFNE
810 820 830 840 850
FMQKIGYERS KYDSCVYFKE LQSGEYIYLL LYVDDILIAS RDKRTVCDLK
860 870 880 890 900
ALLNSEFEMK DLGDAKKILG MEIVRDRKAG TMSISQEGYL LKVLGNFGMD
910 920 930 940 950
QAKPVFTPMG AHFKLKPATD EEVMRQSEVM RAVPYQSAVG SLMYSMIGTR
960 970 980 990 1000
PDLAHSVGLV CRFMSKPLKE HWQAVKWILR YIRGSIDRKL CYKNEGELIL
1010 1020 1030 1040 1050
EGYCDSDYAA DKEGRRSTSG VKVVALSSTE AEYMALTDGA KEAIWLKGHV
1060 1070 1080 1090 1100
SELGFVQKTV NIHCDSQSAI ALAKNAVYHE RTKHIDVKYH FIRDLVNNGE
1110 1120 1130
VQVLKIDTED NPADIFTKVL PVSKFQDALE LLRVSQN
Length:1,137
Mass (Da):129,775
Last modified:November 1, 1998 - v1
Checksum:i7265DF09C6E1025C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005169 Genomic DNA. Translation: AAC62132.1.
PIRiG84581.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005169 Genomic DNA. Translation: AAC62132.1.
PIRiG84581.

3D structure databases

ProteinModelPortaliO82196.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR001584. Integrase_cat-core.
IPR012337. RNaseH-like_dom.
IPR013103. RVT_2.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF00665. rve. 1 hit.
PF07727. RVT_2. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50994. INTEGRASE. 1 hit.
PS50158. ZF_CCHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO82196_ARATH
AccessioniPrimary (citable) accession number: O82196
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: May 11, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.