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Protein

Dof zinc finger protein DOF1.7

Gene

DOF1.7

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri33 – 8755Dof-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  • metal ion binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR
  • transcription regulatory region DNA binding Source: TAIR

GO - Biological processi

  • regulation of transcription, DNA-templated Source: TAIR
  • response to chitin Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Dof zinc finger protein DOF1.7
Short name:
AtDOF1.7
Gene namesi
Name:DOF1.7
Synonyms:ADOF1
Ordered Locus Names:At1g51700
ORF Names:F19C24.9
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G51700.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 194194Dof zinc finger protein DOF1.7PRO_0000074269Add
BLAST

Proteomic databases

PaxDbiO82155.
PRIDEiO82155.

Expressioni

Gene expression databases

ExpressionAtlasiO82155. baseline and differential.
GenevisibleiO82155. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G51700.1.

Family & Domainsi

Sequence similaritiesi

Contains 1 Dof-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri33 – 8755Dof-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG410J0Y6. Eukaryota.
ENOG410YJE1. LUCA.
HOGENOMiHOG000005865.
InParanoidiO82155.
OMAiLASNMQM.
PhylomeDBiO82155.

Family and domain databases

InterProiIPR003851. Znf_Dof.
[Graphical view]
PfamiPF02701. zf-Dof. 1 hit.
[Graphical view]
ProDomiPD007478. Znf_Dof. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS01361. ZF_DOF_1. 1 hit.
PS50884. ZF_DOF_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O82155-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQDLTSAAAY YHQSMMMTTA KQNQPELPEQ EQLKCPRCDS PNTKFCYYNN
60 70 80 90 100
YNLSQPRHFC KNCRRYWTKG GALRNIPVGG GTRKSNKRSG SSPSSNLKNQ
110 120 130 140 150
TVAEKPDHHG SGSEEKEERV SGQEMNPTRM LYGLPVGDPN GASFSSLLAS
160 170 180 190
NMQMGGLVYE SGSRWLPGMD LGLGSVRRSD DTWTDLAMNR MEKN
Length:194
Mass (Da):21,682
Last modified:November 1, 1998 - v1
Checksum:i960CB9CF86C63BEA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB017564 mRNA. Translation: BAA33196.1.
AC025294 Genomic DNA. Translation: AAG50875.1.
CP002684 Genomic DNA. Translation: AEE32704.1.
PIRiT52044.
RefSeqiNP_175581.1. NM_104048.3.
UniGeneiAt.256.

Genome annotation databases

EnsemblPlantsiAT1G51700.1; AT1G51700.1; AT1G51700.
GeneIDi841595.
GrameneiAT1G51700.1; AT1G51700.1; AT1G51700.
KEGGiath:AT1G51700.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB017564 mRNA. Translation: BAA33196.1.
AC025294 Genomic DNA. Translation: AAG50875.1.
CP002684 Genomic DNA. Translation: AEE32704.1.
PIRiT52044.
RefSeqiNP_175581.1. NM_104048.3.
UniGeneiAt.256.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G51700.1.

Proteomic databases

PaxDbiO82155.
PRIDEiO82155.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G51700.1; AT1G51700.1; AT1G51700.
GeneIDi841595.
GrameneiAT1G51700.1; AT1G51700.1; AT1G51700.
KEGGiath:AT1G51700.

Organism-specific databases

TAIRiAT1G51700.

Phylogenomic databases

eggNOGiENOG410J0Y6. Eukaryota.
ENOG410YJE1. LUCA.
HOGENOMiHOG000005865.
InParanoidiO82155.
OMAiLASNMQM.
PhylomeDBiO82155.

Miscellaneous databases

PROiO82155.

Gene expression databases

ExpressionAtlasiO82155. baseline and differential.
GenevisibleiO82155. AT.

Family and domain databases

InterProiIPR003851. Znf_Dof.
[Graphical view]
PfamiPF02701. zf-Dof. 1 hit.
[Graphical view]
ProDomiPD007478. Znf_Dof. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS01361. ZF_DOF_1. 1 hit.
PS50884. ZF_DOF_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "cDNA cloning and gene expression of Dof zinc finger protein in Arabidopsis thaliana."
    Itagaki T., Kisu Y., Esaka M.
    Submitted (SEP-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Tissue: Seedling.
  2. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "The Dof family of plant transcription factors."
    Yanagisawa S.
    Trends Plant Sci. 7:555-560(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiDOF17_ARATH
AccessioniPrimary (citable) accession number: O82155
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 25, 2004
Last sequence update: November 1, 1998
Last modified: June 8, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.