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O81916 (YC22_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 71. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Uncharacterized calcium-binding protein At1g02270
Gene names
Ordered Locus Names:At1g02270
ORF Names:T7I23.22, T6A9_9
OrganismArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length484 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subcellular location

Membrane; Single-pass membrane protein Potential.

Sequence similarities

Contains 1 EF-hand domain.

Sequence caution

The sequence AAC24386.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
   Cellular componentMembrane
   DomainTransmembrane
Transmembrane helix
   LigandCalcium
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological processresponse to cold

Inferred from expression pattern. Source: TAIR

   Cellular componentintegral to membrane

Inferred from electronic annotation. Source: UniProtKB-KW

nucleus

Inferred from direct assay. Source: TAIR

   Molecular functioncalcium ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 484484Uncharacterized calcium-binding protein At1g02270
PRO_0000073884

Regions

Transmembrane25 – 4521Helical; Potential
Domain384 – 41936EF-hand
Calcium binding397 – 40812 Potential

Sequences

Sequence LengthMass (Da)Tools
O81916 [UniParc].

Last modified May 29, 2007. Version 2.
Checksum: 9E99EB00A4129FF8

FASTA48455,474
        10         20         30         40         50         60 
MQSHQNRSRL SLILRSRFIP SFSSPLSLFV VLAAVPLPIY FSGLLSGRNN KPLSVMRLNS 

        70         80         90        100        110        120 
NLASSMVESN ISCTTFNILA PIYKRVDQKN HSTRESDFRT LWLARNQRIL DLLLHQRSSV 

       130        140        150        160        170        180 
ICLQEVWVGN EELVNMYHHQ LSSSGYTIYQ LARTNSRGDG LLTAIHKDHF KVVNYRELLF 

       190        200        210        220        230        240 
NDFGDRVAQL LHVKTVIPFP LNGKQDVQQE VIIVNTHLLF PHDSSLSIVR LHQVYKILEY 

       250        260        270        280        290        300 
LEAYQKENKL NHMPIILCGD WNGSKRGHVY KFLRSQGFIS SYDDAHQYTD SDAHRWVSHR 

       310        320        330        340        350        360 
NHRGNICGVD FIWLCNPSDS RKPLRTSWVE AVFSIIKYQL HKASIAEDDA FTFLGAKNHS 

       370        380        390        400        410        420 
DSLTYSDFCL ALQKVNLTGI PHGLSFEETK ELWVRADLDG NGVFDYEELK KIWNMTMVNQ 

       430        440        450        460        470        480 
PGNCKESVME SKKEEGEDEA IGLKVNKAIL FPQEAEKGLW PENYNISDHA CLTVQFSPVK 


MLCS

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed: 11130712] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed: 14593172] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		U89959 Genomic DNA. Translation: AAC24386.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE27408.1.
AY052704 mRNA. Translation: AAK96608.1.
AY063716 mRNA. Translation: AAL36066.1.
IPIIPI00522847.
RefSeqNP_563646.1. NM_100107.4.
UniGeneAt.10716.

3D structure databases

ProteinModelPortalO81916.
SMRO81916. Positions 348-413.
ModBaseSearch...

Proteomic databases

PRIDEO81916.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT1G02270.1; AT1G02270.1; AT1G02270.
GeneID839381.
GenomeReviewsGene locus AT1G02270 in contig CT485782_GR.
KEGGath:AT1G02270.
NMPDRfig|3702.1.peg.345.

Organism-specific databases

TAIRAt1g02270.

Phylogenomic databases

eggNOGKOG2338.
GeneTreeEPGT00050000014637.
HOGENOMHBG559482.
InParanoidO81916.
OMAVESNISC.
PhylomeDBO81916.
ProtClustDBCLSN2916945.

Gene expression databases

ArrayExpressO81916.
GenevestigatorO81916.

Family and domain databases

InterProIPR011992. EF-hand-like_dom.
IPR018249. EF_HAND_2.
IPR005135. Endo/exonuclease/phosphatase.
[Graphical view]
Gene3DG3DSA:1.10.238.10. EF-Hand_type. 1 hit.
PfamPF03372. Exo_endo_phos. 1 hit.
[Graphical view]
SUPFAMSSF56219. Exo_endo_phos. 1 hit.
PROSITEPS00018. EF_HAND_1. False negative.
PS50222. EF_HAND_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYC22_ARATH
AccessionPrimary (citable) accession number: O81916
Secondary accession number(s): Q940T7
Entry history
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: May 29, 2007
Last modified: December 14, 2011
This is version 71 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

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