O81913 (NAC4_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
NAC domain-containing protein 4
Short name=ANAC004

Gene names

Name:	NAC004
Ordered Locus Names:	At1g02230
ORF Names:	T7I23.19

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	359 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Subcellular location	Nucleus Probable.
Domain	The NAC domain includes a DNA-binding domain and a dimerization domain.
Sequence similarities	Contains 1 NAC domain.
Sequence caution	The sequence AAC24383.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Nucleus
Ligand	DNA-binding
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 359	359	NAC domain-containing protein 4		PRO_0000376612
Regions
	Domain	3 – 151	149	NAC
	DNA binding	107 – 157	51	By similarity
	Compositional bias	158 – 161	4	Poly-Ser

Sequences

	Sequence		Length	Mass (Da)
	O81913 [UniParc]. Last modified September 1, 2009. Version 2. Checksum: 82D82A118F94602E	FASTA	359	40,896
	10 20 30 40 50 60 MMNPVGFRFR PNDEEIVDHY LRPKNLDSDT SHVDEVISTV DICSFEPWDL PSKSMIKSRD 70 80 90 100 110 120 GVWYFFSVKE MKYNRGDQQR RRTNSGFWKK TGKTMTVMRK RGNREKIGEK RVLVFKNRDG 130 140 150 160 170 180 SKTDWVMHEY HATSLFPNQM MTYTVCKVEF KGEETEISSS STGSEIEQIH SLIPLVNSSG 190 200 210 220 230 240 GSEGSSFHSQ ELQNSSQSGV FANVQGESQI DDATTPIEEE WKTWLNNDGD EQRNIMFMQD 250 260 270 280 290 300 HRSDYTPLKS LTGVFSDDSS DDNDSDLISP KTNSIGTSST CASFASSNHQ IDQTQHSPDS 310 320 330 340 350 TVQLVSLTQE VSQGPGQVTV IREHKLGEES VKKKRASFVY RMIHRLVKKI HQCYSISRT

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W. Nature 408:816-820(2000) [PubMed: 11130712] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[3]	"ORF cloning and analysis of Arabidopsis transcription factor genes." Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., Takiguchi Y., Takagi M. Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
[4]	"Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana." Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K., Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K., Takahara Y., Yamamoto K., Kikuchi S. DNA Res. 10:239-247(2003) [PubMed: 15029955] [Abstract] Cited for: GENE FAMILY, NOMENCLATURE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U89959 Genomic DNA. Translation: AAC24383.1. Sequence problems. CP002684 Genomic DNA. Translation: AEE27405.1. AB493424 mRNA. Translation: BAH30262.1.
IPI	IPI00517139.
RefSeq	NP_171726.2. NM_100104.2.
UniGene	At.71673.
3D structure databases
HSSP	HSSP built from PDB template 1UT7 based on UniProtKB Q9C932.
ProteinModelPortal	O81913.
SMR	O81913. Positions 1-152.
ModBase	Search...
Proteomic databases
PRIDE	O81913.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT1G02230.1; AT1G02230.1; AT1G02230.
GeneID	837630.
GenomeReviews	Gene locus AT1G02230 in contig CT485782_GR.
KEGG	ath:AT1G02230.
Organism-specific databases
TAIR	At1g02230.
Phylogenomic databases
GeneTree	EPGT00050000000734.
HOGENOM	HBG319724.
ProtClustDB	CLSN2679315.
Gene expression databases
Genevestigator	O81913.
Family and domain databases
InterPro	IPR003441. NAM. [Graphical view]
Pfam	PF02365. NAM. 1 hit. [Graphical view]
SUPFAM	SSF101941. NAM. 1 hit.
PROSITE	PS51005. NAC. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

NAC4_ARATH

Accession

Primary (citable) accession number: O81913
Secondary accession number(s): C0SUS1

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 26, 2009
Last sequence update:	September 1, 2009
Last modified:	September 21, 2011
This is version 46 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program