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Protein
Submitted name:

Class I chitinase

Gene

ChtC2

Organism
Solanum tuberosum (Potato)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Keywords - Ligandi

Chitin-bindingUniRule annotationSAAS annotation

Protein family/group databases

CAZyiCBM18. Carbohydrate-Binding Module Family 18.
GH19. Glycoside Hydrolase Family 19.

Names & Taxonomyi

Protein namesi
Submitted name:
Class I chitinaseImported (EC:3.2.1.14Imported)
Gene namesi
Name:ChtC2Imported
OrganismiSolanum tuberosum (Potato)Imported
Taxonomic identifieri4113 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeSolanoideaeSolaneaeSolanum

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Sequence analysisAdd
BLAST
Chaini20 – 329310Sequence analysisPRO_5004160452Add
BLAST

Keywords - PTMi

Disulfide bondSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliO81145.
SMRiO81145. Positions 20-320.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini19 – 6143Chitin-binding type-1InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 19 family.SAAS annotation
Contains 1 chitin-binding type-1 domain.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

KOiK01183.

Family and domain databases

Gene3Di3.30.60.10. 1 hit.
InterProiIPR001002. Chitin-bd_1.
IPR018371. Chitin-binding_1_CS.
IPR016283. Glyco_hydro_19.
IPR000726. Glyco_hydro_19_cat.
IPR023346. Lysozyme-like_dom.
[Graphical view]
PfamiPF00187. Chitin_bind_1. 1 hit.
PF00182. Glyco_hydro_19. 1 hit.
[Graphical view]
PIRSFiPIRSF001060. Endochitinase. 1 hit.
PRINTSiPR00451. CHITINBINDNG.
ProDomiPD000609. Chitin_bd_1. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00270. ChtBD1. 1 hit.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.
SSF57016. SSF57016. 1 hit.
PROSITEiPS00026. CHIT_BIND_I_1. 1 hit.
PS50941. CHIT_BIND_I_2. 1 hit.
PS00773. CHITINASE_19_1. 1 hit.
PS00774. CHITINASE_19_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O81145-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLSACSLLF SLLLLTVSAE QCGRQAGGAP CAAGLCCSNV GWCGNTDDYC
60 70 80 90 100
GPGKCQSQCP SGPSPKPPTP GPGPSGGDIG DVISNSMFDQ LLMHRNENSC
110 120 130 140 150
EGKNNFYSYN AFINAARFFS GFGTTGDTTA RKKEIAAFFA QTSHETTGGW
160 170 180 190 200
ASAPNGPYAW GYCFITEQND QSDHCTPSNQ WPCAPGRKYF GRGPIQISHN
210 220 230 240 250
YNYGPCGRAI EVDLLNNPDL VATDSVISFK SAIWFWMTPQ SPKPSCHDVI
260 270 280 290 300
TGRWQPSDAD RAANRLPGFG VITNIINGGI ECGHGNDTRV QDRIGFFRRY
310 320
CEILGVSLGD NLDCGNQSPF GNGLLVDSM
Length:329
Mass (Da):35,331
Last modified:November 1, 1998 - v1
Checksum:i6FF38AA0BD0B462D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF043248 mRNA. Translation: AAC24808.1.
AF153195 Genomic DNA. Translation: AAF25602.1.
PIRiT07000.
RefSeqiNP_001305548.1. NM_001318619.1.
UniGeneiStu.9871.

Genome annotation databases

GeneIDi102592970.
KEGGisot:102592970.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF043248 mRNA. Translation: AAC24808.1.
AF153195 Genomic DNA. Translation: AAF25602.1.
PIRiT07000.
RefSeqiNP_001305548.1. NM_001318619.1.
UniGeneiStu.9871.

3D structure databases

ProteinModelPortaliO81145.
SMRiO81145. Positions 20-320.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiCBM18. Carbohydrate-Binding Module Family 18.
GH19. Glycoside Hydrolase Family 19.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi102592970.
KEGGisot:102592970.

Phylogenomic databases

KOiK01183.

Family and domain databases

Gene3Di3.30.60.10. 1 hit.
InterProiIPR001002. Chitin-bd_1.
IPR018371. Chitin-binding_1_CS.
IPR016283. Glyco_hydro_19.
IPR000726. Glyco_hydro_19_cat.
IPR023346. Lysozyme-like_dom.
[Graphical view]
PfamiPF00187. Chitin_bind_1. 1 hit.
PF00182. Glyco_hydro_19. 1 hit.
[Graphical view]
PIRSFiPIRSF001060. Endochitinase. 1 hit.
PRINTSiPR00451. CHITINBINDNG.
ProDomiPD000609. Chitin_bd_1. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00270. ChtBD1. 1 hit.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.
SSF57016. SSF57016. 1 hit.
PROSITEiPS00026. CHIT_BIND_I_1. 1 hit.
PS50941. CHIT_BIND_I_2. 1 hit.
PS00773. CHITINASE_19_1. 1 hit.
PS00774. CHITINASE_19_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "A distinct member of the basic (class I) chitinase gene family in potato is specifically expressed in epidermal cells."
    Ancillo G., Witte B., Schmelzer E., Kombrink E.
    Plant Mol. Biol. 39:1137-1151(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: LeavesImported.
  2. "The promoter of the potato chitinase C gene directs expression to epidermal cells."
    Ancillo G., Hoegen E., Kombrink E.
    Planta 217:566-576(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiO81145_SOLTU
AccessioniPrimary (citable) accession number: O81145
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: June 8, 2016
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.