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Protein
Submitted name:

C2H2-type zinc finger family protein

Gene

At2g26940

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  • metal ion binding Source: InterPro
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • regulation of transcription, DNA-templated Source: TAIR
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
C2H2-type zinc finger family proteinImported
Submitted name:
Putative C2H2-type zinc finger proteinImported
Gene namesi
Ordered Locus Names:At2g26940Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G26940.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G26940.1.

Structurei

3D structure databases

SMRiO81013. Positions 40-79, 116-144.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini49 – 7628C2H2-typeInterPro annotationAdd
BLAST
Domaini119 – 14123C2H2-typeInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
HOGENOMiHOG000115152.
OMAiEGKIRCC.

Family and domain databases

InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
[Graphical view]
PfamiPF13912. zf-C2H2_6. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 2 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 2 hits.
PS50157. ZINC_FINGER_C2H2_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O81013-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRTRDLYGD ESSSSESEEF HREKIRVKVK LPEERSEDED ESPQPQRKHF
60 70 80 90 100
CVICEKQFSS GKAYGGHVRI HSIEYNNKGK MKKMKKMKLK KKKKRKIGLV
110 120 130 140 150
KKEKEKEIDL ARTDVEGKIR CCLCGKEFQT MHSLFGHMRR HPDRTWKGIR
160 170 180 190 200
PPPPSEKFNL SYLDDDVDDE DEDDDDVMSR SMMMSDVPED VQGAACILMM
210 220 230 240 250
LSYASRNYWA GIEESPKSEV RSSSFYKDDE GKDKVLGDSR MDEKKGLIVD
260 270 280
MKIKMEMEVK VNSPRDEAKR SLGFDLNQPP YHEDHP
Length:286
Mass (Da):33,350
Last modified:November 1, 1998 - v1
Checksum:iD79561F7B8411A7B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005168 Genomic DNA. Translation: AAC32249.1.
CP002685 Genomic DNA. Translation: AEC07909.1.
PIRiT02641.
RefSeqiNP_180262.1. NM_128251.1.
UniGeneiAt.66250.

Genome annotation databases

EnsemblPlantsiAT2G26940.1; AT2G26940.1; AT2G26940.
GeneIDi817235.
GrameneiAT2G26940.1; AT2G26940.1; AT2G26940.
KEGGiath:AT2G26940.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005168 Genomic DNA. Translation: AAC32249.1.
CP002685 Genomic DNA. Translation: AEC07909.1.
PIRiT02641.
RefSeqiNP_180262.1. NM_128251.1.
UniGeneiAt.66250.

3D structure databases

SMRiO81013. Positions 40-79, 116-144.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G26940.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G26940.1; AT2G26940.1; AT2G26940.
GeneIDi817235.
GrameneiAT2G26940.1; AT2G26940.1; AT2G26940.
KEGGiath:AT2G26940.

Organism-specific databases

TAIRiAT2G26940.

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
HOGENOMiHOG000115152.
OMAiEGKIRCC.

Family and domain databases

InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
[Graphical view]
PfamiPF13912. zf-C2H2_6. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 2 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 2 hits.
PS50157. ZINC_FINGER_C2H2_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
  3. Town C.D., Kaul S.
    Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  5. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiO81013_ARATH
AccessioniPrimary (citable) accession number: O81013
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: April 13, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.