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Protein

AT-hook motif nuclear-localized protein 9

Gene

AHL9

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi98 – 110A.T hook 1Sequence analysisAdd BLAST13
DNA bindingi132 – 144A.T hook 2Sequence analysisAdd BLAST13

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
AT-hook motif nuclear-localized protein 9Imported
Gene namesi
Name:AHL91 Publication
Ordered Locus Names:At2g45850Imported
ORF Names:F4I18.17Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G45850
TAIRilocus:2050766 AT2G45850

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004320271 – 348AT-hook motif nuclear-localized protein 9Add BLAST348

Proteomic databases

PaxDbiO80834

PTM databases

iPTMnetiO80834

Expressioni

Gene expression databases

ExpressionAtlasiO80834 baseline and differential
GenevisibleiO80834 AT

Interactioni

Protein-protein interaction databases

IntActiO80834, 7 interactors
STRINGi3702.AT2G45850.1

Structurei

3D structure databases

ProteinModelPortaliO80834
SMRiO80834
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini157 – 299PPCPROSITE-ProRule annotationAdd BLAST143

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi98 – 106Bipartite nuclear localization signalCurated9

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi34 – 37Poly-GlnSequence analysis4
Compositional biasi88 – 92Poly-ProSequence analysis5
Compositional biasi118 – 123Poly-SerSequence analysis6
Compositional biasi308 – 311Poly-AsnSequence analysis4

Domaini

The PPC domain mediates interactions between AHL proteins.1 Publication

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG410IR56 Eukaryota
ENOG410YDXW LUCA
HOGENOMiHOG000116506
OMAiSPPGAIQ
OrthoDBiEOG09360J78
PhylomeDBiO80834

Family and domain databases

CDDicd11378 DUF296, 1 hit
InterProiView protein in InterPro
IPR017956 AT_hook_DNA-bd_motif
IPR005175 PPC_dom
PfamiView protein in Pfam
PF03479 DUF296, 1 hit
SMARTiView protein in SMART
SM00384 AT_hook, 2 hits
PROSITEiView protein in PROSITE
PS51742 PPC, 1 hit

Sequencei

Sequence statusi: Complete.

O80834-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG
60 70 80 90 100
SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
110 120 130 140 150
RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV
160 170 180 190 200
GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
210 220 230 240 250
TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS
260 270 280 290 300
PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
310 320 330 340
DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG
Length:348
Mass (Da):36,335
Last modified:November 1, 1998 - v1
Checksum:i91340BCEF87B114D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004665 Genomic DNA Translation: AAC28539.1
CP002685 Genomic DNA Translation: AEC10609.1
CP002685 Genomic DNA Translation: AEC10610.1
AF367271 mRNA Translation: AAK56260.1
AY059157 mRNA Translation: AAL15382.1
AY062699 mRNA Translation: AAL32777.1
AY114678 mRNA Translation: AAM47997.1
BR000345 mRNA Translation: FAA00280.1
PIRiT02462
RefSeqiNP_182109.1, NM_130148.3
NP_850442.1, NM_180111.2
UniGeneiAt.12707
At.48596

Genome annotation databases

EnsemblPlantsiAT2G45850.1; AT2G45850.1; AT2G45850
AT2G45850.2; AT2G45850.2; AT2G45850
GeneIDi819193
GrameneiAT2G45850.1; AT2G45850.1; AT2G45850
AT2G45850.2; AT2G45850.2; AT2G45850
KEGGiath:AT2G45850

Similar proteinsi

Entry informationi

Entry nameiAHL9_ARATH
AccessioniPrimary (citable) accession number: O80834
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 4, 2015
Last sequence update: November 1, 1998
Last modified: April 25, 2018
This is version 119 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health