Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

AT-hook motif nuclear-localized protein 9

Gene

AHL9

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi98 – 11013A.T hook 1Sequence analysisAdd
BLAST
DNA bindingi132 – 14413A.T hook 2Sequence analysisAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
AT-hook motif nuclear-localized protein 9Imported
Gene namesi
Name:AHL91 Publication
Ordered Locus Names:At2g45850Imported
ORF Names:F4I18.17Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G45850.

Subcellular locationi

  • Nucleus By similarity

GO - Cellular componenti

  • nucleus Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 348348AT-hook motif nuclear-localized protein 9PRO_0000432027Add
BLAST

Proteomic databases

PaxDbiO80834.
PRIDEiO80834.

PTM databases

iPTMnetiO80834.

Expressioni

Gene expression databases

GenevisibleiO80834. AT.

Interactioni

Protein-protein interaction databases

IntActiO80834. 7 interactions.
STRINGi3702.AT2G45850.1.

Structurei

3D structure databases

ProteinModelPortaliO80834.
SMRiO80834. Positions 163-278.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini157 – 299143PPCPROSITE-ProRule annotationAdd
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi98 – 1069Bipartite nuclear localization signalCurated

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi34 – 374Poly-GlnSequence analysis
Compositional biasi88 – 925Poly-ProSequence analysis
Compositional biasi118 – 1236Poly-SerSequence analysis
Compositional biasi308 – 3114Poly-AsnSequence analysis

Domaini

The PPC domain mediates interactions between AHL proteins.1 Publication

Sequence similaritiesi

Contains 2 A.T hook DNA-binding domains.Sequence analysis
Contains 1 PPC domain.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG410IR56. Eukaryota.
ENOG410YDXW. LUCA.
HOGENOMiHOG000116506.
OMAiHNSPNIR.
OrthoDBiEOG09360J78.
PhylomeDBiO80834.

Family and domain databases

CDDicd11378. DUF296. 1 hit.
InterProiIPR017956. AT_hook_DNA-bd_motif.
IPR005175. PPC_dom.
[Graphical view]
PfamiPF03479. DUF296. 1 hit.
[Graphical view]
SMARTiSM00384. AT_hook. 2 hits.
[Graphical view]
PROSITEiPS51742. PPC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O80834-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG
60 70 80 90 100
SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
110 120 130 140 150
RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV
160 170 180 190 200
GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
210 220 230 240 250
TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS
260 270 280 290 300
PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
310 320 330 340
DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG
Length:348
Mass (Da):36,335
Last modified:November 1, 1998 - v1
Checksum:i91340BCEF87B114D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004665 Genomic DNA. Translation: AAC28539.1.
CP002685 Genomic DNA. Translation: AEC10609.1.
CP002685 Genomic DNA. Translation: AEC10610.1.
AF367271 mRNA. Translation: AAK56260.1.
AY059157 mRNA. Translation: AAL15382.1.
AY062699 mRNA. Translation: AAL32777.1.
AY114678 mRNA. Translation: AAM47997.1.
BR000345 mRNA. Translation: FAA00280.1.
PIRiT02462.
RefSeqiNP_182109.1. NM_130148.3.
NP_850442.1. NM_180111.2.
UniGeneiAt.12707.
At.48596.

Genome annotation databases

EnsemblPlantsiAT2G45850.1; AT2G45850.1; AT2G45850.
AT2G45850.2; AT2G45850.2; AT2G45850.
GeneIDi819193.
GrameneiAT2G45850.1; AT2G45850.1; AT2G45850.
AT2G45850.2; AT2G45850.2; AT2G45850.
KEGGiath:AT2G45850.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004665 Genomic DNA. Translation: AAC28539.1.
CP002685 Genomic DNA. Translation: AEC10609.1.
CP002685 Genomic DNA. Translation: AEC10610.1.
AF367271 mRNA. Translation: AAK56260.1.
AY059157 mRNA. Translation: AAL15382.1.
AY062699 mRNA. Translation: AAL32777.1.
AY114678 mRNA. Translation: AAM47997.1.
BR000345 mRNA. Translation: FAA00280.1.
PIRiT02462.
RefSeqiNP_182109.1. NM_130148.3.
NP_850442.1. NM_180111.2.
UniGeneiAt.12707.
At.48596.

3D structure databases

ProteinModelPortaliO80834.
SMRiO80834. Positions 163-278.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO80834. 7 interactions.
STRINGi3702.AT2G45850.1.

PTM databases

iPTMnetiO80834.

Proteomic databases

PaxDbiO80834.
PRIDEiO80834.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G45850.1; AT2G45850.1; AT2G45850.
AT2G45850.2; AT2G45850.2; AT2G45850.
GeneIDi819193.
GrameneiAT2G45850.1; AT2G45850.1; AT2G45850.
AT2G45850.2; AT2G45850.2; AT2G45850.
KEGGiath:AT2G45850.

Organism-specific databases

TAIRiAT2G45850.

Phylogenomic databases

eggNOGiENOG410IR56. Eukaryota.
ENOG410YDXW. LUCA.
HOGENOMiHOG000116506.
OMAiHNSPNIR.
OrthoDBiEOG09360J78.
PhylomeDBiO80834.

Miscellaneous databases

PROiO80834.

Gene expression databases

GenevisibleiO80834. AT.

Family and domain databases

CDDicd11378. DUF296. 1 hit.
InterProiIPR017956. AT_hook_DNA-bd_motif.
IPR005175. PPC_dom.
[Graphical view]
PfamiPF03479. DUF296. 1 hit.
[Graphical view]
SMARTiSM00384. AT_hook. 2 hits.
[Graphical view]
PROSITEiPS51742. PPC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiAHL9_ARATH
AccessioniPrimary (citable) accession number: O80834
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 4, 2015
Last sequence update: November 1, 1998
Last modified: September 7, 2016
This is version 111 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.