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Protein

Agamous-like MADS-box protein AGL23

Gene

AGL23

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Probable transcription factor that controls female gametophyte (megagametogenesis) development and chloroplast biogenesis during embryo development.1 Publication

GO - Molecular functioni

GO - Biological processi

  • chloroplast organization Source: TAIR
  • embryo sac development Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Agamous-like MADS-box protein AGL23Curated
Gene namesi
Name:AGL231 Publication
Ordered Locus Names:At1g65360Imported
ORF Names:T8F5.14Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G65360.
TAIRilocus:2206320. AT1G65360.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Disruption phenotypei

Embryonic lethality when homozygous.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004339631 – 226Agamous-like MADS-box protein AGL23Add BLAST226

Proteomic databases

PaxDbiO80807.

Expressioni

Developmental stagei

During embryo development, expressed in the functional megaspore until maturity of the embryo sac. After fertilization, expressed in the embryo and endosperm until the early torpedo stage. Not expressed in mature embryo.1 Publication

Gene expression databases

GenevisibleiO80807. AT.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

IntActiO80807. 12 interactors.
STRINGi3702.AT1G65360.1.

Structurei

3D structure databases

ProteinModelPortaliO80807.
SMRiO80807.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 66MADS-boxPROSITE-ProRule annotationAdd BLAST61

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili95 – 132Sequence analysisAdd BLAST38

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000238700.
InParanoidiO80807.
OMAiIQREETD.
OrthoDBiEOG09360N3G.
PhylomeDBiO80807.

Family and domain databases

Gene3Di3.40.1810.10. 1 hit.
InterProiView protein in InterPro
IPR002100. TF_MADSbox.
PfamiView protein in Pfam
PF00319. SRF-TF. 1 hit.
PRINTSiPR00404. MADSDOMAIN.
SMARTiView protein in SMART
SM00432. MADS. 1 hit.
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiView protein in PROSITE
PS50066. MADS_BOX_2. 1 hit.

Sequencei

Sequence statusi: Complete.

O80807-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKKTLGRRK VEIVKMTKES NLQVTFSKRK AGLFKKASEF CTLCDAKIAM
60 70 80 90 100
IVFSPAGKVF SFGHPNVDVL LDHFRGCVVG HNNTNLDESY TKLHVQMLNK
110 120 130 140 150
SYTEVKAEVE KEQKNKQSRA QNERENENAE EWWSKSPLEL NLSQSTCMIR
160 170 180 190 200
VLKDLKKIVD EKAIQLIHQT NPNFYVGSSS NAAAPATVSG GNISTNQGFF
210 220
DQNGMTTNPT QTLLFGFDIM NRTPGV
Length:226
Mass (Da):25,337
Last modified:November 1, 1998 - v1
Checksum:i6F6833ED4E5E864E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004512 Genomic DNA. Translation: AAC27145.1.
CP002684 Genomic DNA. Translation: AEE34365.1.
AY141230 mRNA. Translation: AAN52794.1.
PIRiT02359.
RefSeqiNP_176715.1. NM_105210.2.
UniGeneiAt.35891.

Genome annotation databases

EnsemblPlantsiAT1G65360.1; AT1G65360.1; AT1G65360.
GeneIDi842846.
GrameneiAT1G65360.1; AT1G65360.1; AT1G65360.
KEGGiath:AT1G65360.

Similar proteinsi

Entry informationi

Entry nameiAGL23_ARATH
AccessioniPrimary (citable) accession number: O80807
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 14, 2015
Last sequence update: November 1, 1998
Last modified: September 27, 2017
This is version 127 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names