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Protein

Agamous-like MADS-box protein AGL23

Gene

AGL23

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Probable transcription factor that controls female gametophyte (megagametogenesis) development and chloroplast biogenesis during embryo development.1 Publication

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • chloroplast organization Source: TAIR
  • embryo sac development Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Agamous-like MADS-box protein AGL23Curated
Gene namesi
Name:AGL231 Publication
Ordered Locus Names:At1g65360Imported
ORF Names:T8F5.14Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G65360.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Disruption phenotypei

Embryonic lethality when homozygous.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 226226Agamous-like MADS-box protein AGL23PRO_0000433963Add
BLAST

Proteomic databases

PaxDbiO80807.

Expressioni

Developmental stagei

During embryo development, expressed in the functional megaspore until maturity of the embryo sac. After fertilization, expressed in the embryo and endosperm until the early torpedo stage. Not expressed in mature embryo.1 Publication

Gene expression databases

GenevisibleiO80807. AT.

Interactioni

Protein-protein interaction databases

IntActiO80807. 2 interactions.
STRINGi3702.AT1G65360.1.

Structurei

3D structure databases

ProteinModelPortaliO80807.
SMRiO80807. Positions 7-71.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini6 – 6661MADS-boxPROSITE-ProRule annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili95 – 13238Sequence analysisAdd
BLAST

Sequence similaritiesi

Contains 1 MADS-box domain.PROSITE-ProRule annotation

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000238700.
InParanoidiO80807.
OMAiDAKIAMI.
OrthoDBiEOG09360N3G.
PhylomeDBiO80807.

Family and domain databases

InterProiIPR002100. TF_MADSbox.
[Graphical view]
PfamiPF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS50066. MADS_BOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O80807-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKKTLGRRK VEIVKMTKES NLQVTFSKRK AGLFKKASEF CTLCDAKIAM
60 70 80 90 100
IVFSPAGKVF SFGHPNVDVL LDHFRGCVVG HNNTNLDESY TKLHVQMLNK
110 120 130 140 150
SYTEVKAEVE KEQKNKQSRA QNERENENAE EWWSKSPLEL NLSQSTCMIR
160 170 180 190 200
VLKDLKKIVD EKAIQLIHQT NPNFYVGSSS NAAAPATVSG GNISTNQGFF
210 220
DQNGMTTNPT QTLLFGFDIM NRTPGV
Length:226
Mass (Da):25,337
Last modified:November 1, 1998 - v1
Checksum:i6F6833ED4E5E864E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004512 Genomic DNA. Translation: AAC27145.1.
CP002684 Genomic DNA. Translation: AEE34365.1.
AY141230 mRNA. Translation: AAN52794.1.
PIRiT02359.
RefSeqiNP_176715.1. NM_105210.1.
UniGeneiAt.35891.

Genome annotation databases

EnsemblPlantsiAT1G65360.1; AT1G65360.1; AT1G65360.
GeneIDi842846.
GrameneiAT1G65360.1; AT1G65360.1; AT1G65360.
KEGGiath:AT1G65360.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004512 Genomic DNA. Translation: AAC27145.1.
CP002684 Genomic DNA. Translation: AEE34365.1.
AY141230 mRNA. Translation: AAN52794.1.
PIRiT02359.
RefSeqiNP_176715.1. NM_105210.1.
UniGeneiAt.35891.

3D structure databases

ProteinModelPortaliO80807.
SMRiO80807. Positions 7-71.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO80807. 2 interactions.
STRINGi3702.AT1G65360.1.

Proteomic databases

PaxDbiO80807.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G65360.1; AT1G65360.1; AT1G65360.
GeneIDi842846.
GrameneiAT1G65360.1; AT1G65360.1; AT1G65360.
KEGGiath:AT1G65360.

Organism-specific databases

TAIRiAT1G65360.

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000238700.
InParanoidiO80807.
OMAiDAKIAMI.
OrthoDBiEOG09360N3G.
PhylomeDBiO80807.

Miscellaneous databases

PROiO80807.

Gene expression databases

GenevisibleiO80807. AT.

Family and domain databases

InterProiIPR002100. TF_MADSbox.
[Graphical view]
PfamiPF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS50066. MADS_BOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiAGL23_ARATH
AccessioniPrimary (citable) accession number: O80807
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 14, 2015
Last sequence update: November 1, 1998
Last modified: September 7, 2016
This is version 119 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.