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Protein

Short-chain dehydrogenase reductase 3c

Gene

SDR3c

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei144 – 1441SubstrateBy similarity
Active sitei156 – 1561Proton acceptorBy similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi12 – 3625NAD or NADPBy similarityAdd
BLAST

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Enzyme and pathway databases

BioCyciARA:AT2G47120-MONOMER.
ReactomeiR-ATH-2142700. Synthesis of Lipoxins (LX).
R-ATH-70895. Branched-chain amino acid catabolism.

Names & Taxonomyi

Protein namesi
Recommended name:
Short-chain dehydrogenase reductase 3c (EC:1.1.1.-)
Short name:
AtSDR3c
Gene namesi
Name:SDR3c
Ordered Locus Names:At2g47120
ORF Names:F14M4
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G47120.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 258258Short-chain dehydrogenase reductase 3cPRO_0000419513Add
BLAST

Proteomic databases

PaxDbiO80714.
PRIDEiO80714.

Expressioni

Gene expression databases

GenevisibleiO80714. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G47120.1.

Structurei

3D structure databases

ProteinModelPortaliO80714.
SMRiO80714. Positions 5-256.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0725. Eukaryota.
COG1028. LUCA.
InParanoidiO80714.
OMAiTHTHELI.
PhylomeDBiO80714.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR002347. SDR_fam.
[Graphical view]
PANTHERiPTHR24322. PTHR24322. 1 hit.
PRINTSiPR00081. GDHRDH.
PR00080. SDRFAMILY.
SUPFAMiSSF51735. SSF51735. 1 hit.

Sequencei

Sequence statusi: Complete.

O80714-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGLRLEGKI VIITGGASGI GADAARLFTD HGAKVVIVDV QEELGQNVAV
60 70 80 90 100
LIGKDKASFY RCDVTNETEV EDAVKFTVEK HGKLDVLFSN AGVLEPLESF
110 120 130 140 150
LDFDLERFDR IMAVNVRGAA AFIKHAARAM VEKGTRGSIV CTTSVSAEIG
160 170 180 190 200
GGHHGYTASK HGLVGLIRSA CGDLGKYGIR VNGVAPYAVA TPMTSHDEVT
210 220 230 240 250
GKQLEDYFDA KGILKGMVLK ASHVAQVALF LASDDSAYIS GQNLAVDGGY

TVVKPSRD
Length:258
Mass (Da):27,259
Last modified:November 1, 1998 - v1
Checksum:i0417B5E23F5B1E90
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004411 Genomic DNA. Translation: AAC34218.1.
CP002685 Genomic DNA. Translation: AEC10804.1.
PIRiT02176.
RefSeqiNP_182234.1. NM_130280.1.
UniGeneiAt.36406.

Genome annotation databases

EnsemblPlantsiAT2G47120.1; AT2G47120.1; AT2G47120.
GeneIDi819325.
GrameneiAT2G47120.1; AT2G47120.1; AT2G47120.
KEGGiath:AT2G47120.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004411 Genomic DNA. Translation: AAC34218.1.
CP002685 Genomic DNA. Translation: AEC10804.1.
PIRiT02176.
RefSeqiNP_182234.1. NM_130280.1.
UniGeneiAt.36406.

3D structure databases

ProteinModelPortaliO80714.
SMRiO80714. Positions 5-256.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G47120.1.

Proteomic databases

PaxDbiO80714.
PRIDEiO80714.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G47120.1; AT2G47120.1; AT2G47120.
GeneIDi819325.
GrameneiAT2G47120.1; AT2G47120.1; AT2G47120.
KEGGiath:AT2G47120.

Organism-specific databases

TAIRiAT2G47120.

Phylogenomic databases

eggNOGiKOG0725. Eukaryota.
COG1028. LUCA.
InParanoidiO80714.
OMAiTHTHELI.
PhylomeDBiO80714.

Enzyme and pathway databases

BioCyciARA:AT2G47120-MONOMER.
ReactomeiR-ATH-2142700. Synthesis of Lipoxins (LX).
R-ATH-70895. Branched-chain amino acid catabolism.

Miscellaneous databases

PROiO80714.

Gene expression databases

GenevisibleiO80714. AT.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR002347. SDR_fam.
[Graphical view]
PANTHERiPTHR24322. PTHR24322. 1 hit.
PRINTSiPR00081. GDHRDH.
PR00080. SDRFAMILY.
SUPFAMiSSF51735. SSF51735. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.

Entry informationi

Entry nameiSDR3C_ARATH
AccessioniPrimary (citable) accession number: O80714
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 3, 2012
Last sequence update: November 1, 1998
Last modified: May 11, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.