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Protein

Probable RuBisCO transcriptional regulator

Gene

rbcR

Organism
Guillardia theta (Cryptomonas phi)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression.By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi23 – 4220H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable RuBisCO transcriptional regulator
Gene namesi
Name:rbcR
Synonyms:ycf30
Encoded oniPlastid; Chloroplast
OrganismiGuillardia theta (Cryptomonas phi)
Taxonomic identifieri55529 [NCBI]
Taxonomic lineageiEukaryotaCryptophytaPyrenomonadalesGeminigeraceaeGuillardia

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 310310Probable RuBisCO transcriptional regulatorPRO_0000105771Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliO78432.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini6 – 6358HTH lysR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

HOGENOMiHOG000233518.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O78432-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTDLPFTLDQ LRILKAIASE GSFKKAAESL YISQPAVSLQ IQNLEKQLNI
60 70 80 90 100
PIFDRANRKA VFTEEGDTLL RYGNRVLSLC DETCRAIEDL KTLQGGTLII
110 120 130 140 150
GASQTTGTYL MPRLIGLFRH KYPQIAVQLQ VHSTRRVAWS VANGQVNLAV
160 170 180 190 200
VGGKVPDELR SKLQITPYVD DELALILPKL HPFSKLEVIQ KEDLYRLRFI
210 220 230 240 250
TLDKQSTIRR VIDTVLNEHG IDSARFKIEM ELNSVEAIKN AVQSGLGAAF
260 270 280 290 300
VSISAIAKEL ELGLLHWVKI EGVVIKRTLS IITNPSRYQA KASEIFSKEI
310
LTLFVTPYEI
Length:310
Mass (Da):34,728
Last modified:November 1, 1998 - v1
Checksum:i708366328B57BC03
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF041468 Genomic DNA. Translation: AAC35617.1.
RefSeqiNP_050683.1. NC_000926.1.

Genome annotation databases

GeneIDi856973.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF041468 Genomic DNA. Translation: AAC35617.1.
RefSeqiNP_050683.1. NC_000926.1.

3D structure databases

ProteinModelPortaliO78432.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi856973.

Phylogenomic databases

HOGENOMiHOG000233518.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRBCR_GUITH
AccessioniPrimary (citable) accession number: O78432
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: November 1, 1998
Last modified: September 7, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.