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Protein
Submitted name:

GATA transcription factor

Gene

GATA

Organism
Strongylocentrotus purpuratus (Purple sea urchin)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
GATA transcription factorImported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:GATAImported
Synonyms:Sp-GataCImported
OrganismiStrongylocentrotus purpuratus (Purple sea urchin)
Taxonomic identifieri7668 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEchinodermataEleutherozoaEchinozoaEchinoideaEuechinoideaEchinaceaEchinoidaStrongylocentrotidaeStrongylocentrotus
Proteomesi
  • UP000007110 Componenti: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi7668.SPU_027015tr.

Structurei

3D structure databases

ProteinModelPortaliO77156.
SMRiO77156. Positions 216-260, 268-333.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini215 – 26955GATA-typeInterPro annotationAdd
BLAST
Domaini268 – 32154GATA-typeInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG1601. Eukaryota.
COG5641. LUCA.
HOGENOMiHOG000047701.
KOiK17894.
OMAiTTEGREC.
OrthoDBiEOG7CCBRF.

Family and domain databases

Gene3Di3.30.50.10. 2 hits.
InterProiIPR016374. TF_GATA-2/3.
IPR000679. Znf_GATA.
IPR013088. Znf_NHR/GATA.
[Graphical view]
PfamiPF00320. GATA. 2 hits.
[Graphical view]
PIRSFiPIRSF003027. TF_GATA-1/2/3. 1 hit.
PRINTSiPR00619. GATAZNFINGER.
SMARTiSM00401. ZnF_GATA. 2 hits.
[Graphical view]
PROSITEiPS00344. GATA_ZN_FINGER_1. 2 hits.
PS50114. GATA_ZN_FINGER_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O77156-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKFLAGVASS QVCRPHFHTP TFQWLDSGKS LHGVQGSGAW CGGPFGSSAP
60 70 80 90 100
HPGPTSSYTL PASTPIQPSS HGHPGTVPSA ATHQGNAAAA AAAHYFSFPP
110 120 130 140 150
TPPKDNTPDN IITPVSLHTA NTDYGSELKN GTSSTSGKHI HCNTSNSVSS
160 170 180 190 200
LASTSAMSSS VLDSAYSQAP HHVPAAYASF MSELPNSALN FHHPGVMGNR
210 220 230 240 250
GLAPAPKPRN KSRSTTEGRE CVNCGATSTP LWRRDGNGHY LCNACGLYHK
260 270 280 290 300
MNGQNRPLIK PKRRLSAKRT GTSCANCQAT ATTLWRRNPN GDPVCNACGL
310 320 330 340 350
YYKLHGVNRP LTMKKEGIQT RNRKLSSKSK KNKGKLGVDG LRALSPEDMH
360 370 380 390 400
RFATFSDQAF GAAHYPHHHS SAMDYGMTTA SAYASHGPSV TYPTSGICNS
410 420 430
LYPGTTSHHH VPVPCSLSLS SPATNMVGAL A
Length:431
Mass (Da):45,531
Last modified:November 1, 1998 - v1
Checksum:iAF723C0E12B4D40D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAGJ04150638 Genomic DNA. No translation available.
AF077674 mRNA. Translation: AAC62960.1.
RefSeqiNP_999704.1. NM_214539.1.
UniGeneiSpu.183.

Genome annotation databases

EnsemblMetazoaiSPU_027015-tr; SPU_027015-tr; SPU_027015.
GeneIDi373316.
KEGGispu:373316.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAGJ04150638 Genomic DNA. No translation available.
AF077674 mRNA. Translation: AAC62960.1.
RefSeqiNP_999704.1. NM_214539.1.
UniGeneiSpu.183.

3D structure databases

ProteinModelPortaliO77156.
SMRiO77156. Positions 216-260, 268-333.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7668.SPU_027015tr.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiSPU_027015-tr; SPU_027015-tr; SPU_027015.
GeneIDi373316.
KEGGispu:373316.

Organism-specific databases

CTDi373316.

Phylogenomic databases

eggNOGiKOG1601. Eukaryota.
COG5641. LUCA.
HOGENOMiHOG000047701.
KOiK17894.
OMAiTTEGREC.
OrthoDBiEOG7CCBRF.

Family and domain databases

Gene3Di3.30.50.10. 2 hits.
InterProiIPR016374. TF_GATA-2/3.
IPR000679. Znf_GATA.
IPR013088. Znf_NHR/GATA.
[Graphical view]
PfamiPF00320. GATA. 2 hits.
[Graphical view]
PIRSFiPIRSF003027. TF_GATA-1/2/3. 1 hit.
PRINTSiPR00619. GATAZNFINGER.
SMARTiSM00401. ZnF_GATA. 2 hits.
[Graphical view]
PROSITEiPS00344. GATA_ZN_FINGER_1. 2 hits.
PS50114. GATA_ZN_FINGER_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Origins of immunity: transcription factors and homologues of effector genes of the vertebrate immune system expressed in sea urchin coelomocytes."
    Pancer Z., Rast J.P., Davidson E.H.
    Immunogenetics 49:773-786(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. EnsemblMetazoa
    Submitted (JUN-2015) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiO77156_STRPU
AccessioniPrimary (citable) accession number: O77156
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: March 16, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.