Skip Header

Contribute Send feedback
Read comments (?) or add your own

O76876 (O76876_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 102. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
CG3056, isoform A EMBL AAF45613.1
Submitted name:
EG:132E8.1 protein EMBL CAA19655.1
Gene names
Name:ssx FlyBase FBgn0024987
Synonyms:EG:132E8.1 EMBL CAA19655.1
ORF Names:CG3056 FlyBase FBgn0024987, Dmel_CG3056 EMBL AAF45613.1
OrganismDrosophila melanogaster (Fruit fly)
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora

Protein attributes

Sequence length485 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   DomainRepeat SAAS SAAS002343
   LigandRNA-binding SAAS SAAS002343
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

nucleotide binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
O76876 [UniParc].

Last modified November 1, 1998. Version 1.
Checksum: 18CF01939A11B06E

FASTA48553,395
        10         20         30         40         50         60 
MSNADKMQDQ EHDDEQSSDI EGSGDNVGRD DGTDDDDDSN GNMQQENGDG GNGGDGQEHS 

        70         80         90        100        110        120 
GDEEQHHSQD NEGNDNSAGQ QQQMQQVDRT SATNLIINYL PQDMTDRELY NLFSGCGPIN 

       130        140        150        160        170        180 
TCKIMRDFKT GYSFGYGFVD YKTESDSEDA IQKLNGFYVR NKRLKVSYAR PGGQSIKDTN 

       190        200        210        220        230        240 
LYVINLSRNI NDDMLDRIFS PYGLIVQRNI LRDKLTGRPR GVAFVRYNKR EEAQEAIKAL 

       250        260        270        280        290        300 
NNTVPEGGSQ PIWVRLAEEH GKAKAAQFMA QIGGGNGGGG GGPPHMGPGG PMHPPHHHNN 

       310        320        330        340        350        360 
HHHNNHHNPH MPPHHHQPQH PHQHPQHHPQ LHHMQHHHPN NHNNNHPNNH HHNNNNNNHH 

       370        380        390        400        410        420 
NMGGPHPHHM QQMHPMGMNM GMGVNMGMGM GMGMPIHGGG GGGGGGGGGG GGGNFHHMAH 

       430        440        450        460        470        480 
RGEVFMLPLP ICSRFPSQPH PVGNGICHSP NKNSRFRLSR RPQASRTTIR YIAHSVADPV 


PTPTT

« Hide

References

« Hide 'large scale' references
[1]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[2]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley.
[3]Benos P.
Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]"Sequencing the distal X chromosome of Drosophila melanogaster."
Spanos L., Papagiannakis G., Cox S., Siden-Kiamos I., Louis C.
Submitted (JUN-1998) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE014298 Genomic DNA. Translation: AAF45613.1.
AL023893 Genomic DNA. Translation: CAA19655.1.

3D structure databases

HSSPHSSP built from PDB template 3SXL based on UniProtKB P19339.
ProteinModelPortalO76876.
SMRO76876. Positions 91-262.
ModBaseSearch...

Protein-protein interaction databases

IntActO76876. 4 interactions.
MINTMINT-315293.
STRINGO76876.

Proteomic databases

PRIDEO76876.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

UCSCCG3056-RA. d. melanogaster.

Organism-specific databases

FlyBaseFBgn0024987. ssx.

Phylogenomic databases

eggNOGinNOG07181.
GeneTreeEMGT00050000000040.
InParanoidO76876.
OMAIMRDFKT.
OrthoDBEOG4M37RG.
PhylomeDBO76876.

Gene expression databases

ArrayExpressO76876.
BgeeO76876.

Family and domain databases

InterProIPR002343. Hud_Sxl_RNA.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
Gene3DG3DSA:3.30.70.330. a_b_plait_nuc_bd. 2 hits.
PfamPF00076. RRM_1. 2 hits.
[Graphical view]
PRINTSPR00961. HUDSXLRNA.
SMARTSM00360. RRM. 2 hits.
[Graphical view]
PROSITEPS50102. RRM. 2 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio771866.

Entry information

Entry nameO76876_DROME
AccessionPrimary (citable) accession number: O76876
Entry history
Integrated into UniProtKB/TrEMBL: November 1, 1998
Last sequence update: November 1, 1998
Last modified: January 25, 2012
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info