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O75575

- RPC9_HUMAN

UniProt

O75575 - RPC9_HUMAN

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Protein

DNA-directed RNA polymerase III subunit RPC9

Gene

CRCP

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts induce type I interferon and NF- Kappa-B through the RIG-I pathway (By similarity).By similarity
Accessory protein for the calcitonin gene-related peptide (CGRP) receptor. It modulates CGRP responsiveness in a variety of tissues.

GO - Molecular functioni

  1. calcitonin gene-related peptide receptor activity Source: Ensembl
  2. DNA-directed RNA polymerase activity Source: UniProtKB
  3. nucleotide binding Source: InterPro

GO - Biological processi

  1. defense response to virus Source: UniProtKB-KW
  2. innate immune response Source: UniProtKB-KW
  3. neuropeptide signaling pathway Source: Ensembl
  4. transcription from RNA polymerase III promoter Source: UniProtKB
Complete GO annotation...

Keywords - Biological processi

Antiviral defense, Immunity, Innate immunity, Transcription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase III subunit RPC9
Short name:
RNA polymerase III subunit C9
Alternative name(s):
Calcitonin gene-related peptide-receptor component protein
Short name:
CGRP-RCP
Short name:
CGRP-receptor component protein
Short name:
CGRPRCP
Short name:
HsC17
Gene namesi
Name:CRCP
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 7

Organism-specific databases

HGNCiHGNC:17888. CRCP.

Subcellular locationi

Nucleus By similarity. Cell membrane By similarity; Peripheral membrane protein By similarity; Cytoplasmic side By similarity

GO - Cellular componenti

  1. acrosomal vesicle Source: Ensembl
  2. DNA polymerase III complex Source: UniProtKB
  3. nucleus Source: UniProtKB-KW
  4. plasma membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, DNA-directed RNA polymerase, Membrane, Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA164718123.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 148148DNA-directed RNA polymerase III subunit RPC9PRO_0000079335Add
BLAST

Proteomic databases

MaxQBiO75575.
PaxDbiO75575.
PeptideAtlasiO75575.
PRIDEiO75575.

PTM databases

PhosphoSiteiO75575.

Expressioni

Tissue specificityi

Ubiquitous. Most prevalent in testis.1 Publication

Gene expression databases

BgeeiO75575.
ExpressionAtlasiO75575. baseline and differential.
GenevestigatoriO75575.

Organism-specific databases

HPAiHPA007216.

Interactioni

Subunit structurei

Component of the RNA polymerase III (Pol III) complex consisting of 17 subunits (By similarity). Interacts with POLR3H/RPC8. POLR3H/RPC8 and CRCP/RPC9 probably form a Pol III subcomplex.By similarity2 Publications

Protein-protein interaction databases

BioGridi118121. 11 interactions.
IntActiO75575. 2 interactions.
STRINGi9606.ENSP00000378736.

Structurei

3D structure databases

ProteinModelPortaliO75575.
SMRiO75575. Positions 1-122.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiNOG252343.
GeneTreeiENSGT00390000014189.
HOGENOMiHOG000244081.
HOVERGENiHBG023697.
InParanoidiO75575.
OMAiYLSKTPC.
PhylomeDBiO75575.
TreeFamiTF323294.

Family and domain databases

InterProiIPR010997. HRDC-like.
IPR005574. RNA_pol_II_Rpb4.
IPR006590. RNA_pol_II_Rpb4_core.
[Graphical view]
PfamiPF03874. RNA_pol_Rpb4. 1 hit.
[Graphical view]
SMARTiSM00657. RPOL4c. 1 hit.
[Graphical view]
SUPFAMiSSF47819. SSF47819. 1 hit.

Sequences (4)i

Sequence statusi: Complete.

This entry describes 4 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: O75575-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MEVKDANSAL LSNYEVFQLL TDLKEQRKES GKNKHSSGQQ NLNTITYETL
60 70 80 90 100
KYISKTPCRH QSPEIVREFL TALKSHKLTK AEKLQLLNHR PVTAVEIQLM
110 120 130 140
VEESEERLTE EQIEALLHTV TSILPAEPEA EQKKNTNSNV AMDEEDPA
Length:148
Mass (Da):16,871
Last modified:November 1, 1998 - v1
Checksum:i75943BA57A63AF3D
GO
Isoform 2 (identifier: O75575-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     14-46: Missing.

Show »
Length:115
Mass (Da):13,054
Checksum:i60F5C22410882C26
GO
Isoform 3 (identifier: O75575-3) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-13: MEVKDANSALLSN → MQRGDPGEHLGARSWHLGAVGGGGDSCEVKDANSALLSN
     14-46: Missing.

Note: No experimental confirmation available.

Show »
Length:141
Mass (Da):15,613
Checksum:i0A92F564E3A59C9A
GO
Isoform 4 (identifier: O75575-4) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     4-80: Missing.

Note: No experimental confirmation available.

Show »
Length:71
Mass (Da):8,011
Checksum:i9CF80A5EFAA7B63A
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 1313MEVKD…ALLSN → MQRGDPGEHLGARSWHLGAV GGGGDSCEVKDANSALLSN in isoform 3. 1 PublicationVSP_043249Add
BLAST
Alternative sequencei4 – 8077Missing in isoform 4. 1 PublicationVSP_046273Add
BLAST
Alternative sequencei14 – 4633Missing in isoform 2 and isoform 3. 3 PublicationsVSP_007538Add
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF073792 mRNA. Translation: AAC25992.1.
U51134 mRNA. Translation: AAD05036.1.
AK290553 mRNA. Translation: BAF83242.1.
AK303737 mRNA. Translation: BAG64710.1.
AK311829 mRNA. Translation: BAG34771.1.
BP233211 mRNA. No translation available.
BX647867 mRNA. Translation: CAI46069.1.
AC068533 Genomic DNA. No translation available.
CH471140 Genomic DNA. Translation: EAX07941.1.
BC040107 mRNA. Translation: AAH40107.1.
BC105808 mRNA. Translation: AAI05809.1.
CCDSiCCDS47599.1. [O75575-2]
CCDS47600.1. [O75575-4]
CCDS55116.1. [O75575-3]
CCDS5532.1. [O75575-1]
RefSeqiNP_001035737.1. NM_001040647.1. [O75575-2]
NP_001035738.1. NM_001040648.1. [O75575-4]
NP_001135886.1. NM_001142414.1. [O75575-3]
NP_055293.1. NM_014478.4. [O75575-1]
UniGeneiHs.300684.

Genome annotation databases

EnsembliENST00000338592; ENSP00000340044; ENSG00000241258. [O75575-2]
ENST00000395326; ENSP00000378736; ENSG00000241258. [O75575-1]
ENST00000398684; ENSP00000381674; ENSG00000241258. [O75575-4]
ENST00000431089; ENSP00000388653; ENSG00000241258. [O75575-3]
GeneIDi27297.
KEGGihsa:27297.
UCSCiuc003tus.3. human. [O75575-1]
uc003tut.3. human. [O75575-2]
uc011kdw.2. human. [O75575-3]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF073792 mRNA. Translation: AAC25992.1 .
U51134 mRNA. Translation: AAD05036.1 .
AK290553 mRNA. Translation: BAF83242.1 .
AK303737 mRNA. Translation: BAG64710.1 .
AK311829 mRNA. Translation: BAG34771.1 .
BP233211 mRNA. No translation available.
BX647867 mRNA. Translation: CAI46069.1 .
AC068533 Genomic DNA. No translation available.
CH471140 Genomic DNA. Translation: EAX07941.1 .
BC040107 mRNA. Translation: AAH40107.1 .
BC105808 mRNA. Translation: AAI05809.1 .
CCDSi CCDS47599.1. [O75575-2 ]
CCDS47600.1. [O75575-4 ]
CCDS55116.1. [O75575-3 ]
CCDS5532.1. [O75575-1 ]
RefSeqi NP_001035737.1. NM_001040647.1. [O75575-2 ]
NP_001035738.1. NM_001040648.1. [O75575-4 ]
NP_001135886.1. NM_001142414.1. [O75575-3 ]
NP_055293.1. NM_014478.4. [O75575-1 ]
UniGenei Hs.300684.

3D structure databases

ProteinModelPortali O75575.
SMRi O75575. Positions 1-122.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 118121. 11 interactions.
IntActi O75575. 2 interactions.
STRINGi 9606.ENSP00000378736.

PTM databases

PhosphoSitei O75575.

Proteomic databases

MaxQBi O75575.
PaxDbi O75575.
PeptideAtlasi O75575.
PRIDEi O75575.

Protocols and materials databases

DNASUi 27297.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000338592 ; ENSP00000340044 ; ENSG00000241258 . [O75575-2 ]
ENST00000395326 ; ENSP00000378736 ; ENSG00000241258 . [O75575-1 ]
ENST00000398684 ; ENSP00000381674 ; ENSG00000241258 . [O75575-4 ]
ENST00000431089 ; ENSP00000388653 ; ENSG00000241258 . [O75575-3 ]
GeneIDi 27297.
KEGGi hsa:27297.
UCSCi uc003tus.3. human. [O75575-1 ]
uc003tut.3. human. [O75575-2 ]
uc011kdw.2. human. [O75575-3 ]

Organism-specific databases

CTDi 27297.
GeneCardsi GC07P065578.
HGNCi HGNC:17888. CRCP.
HPAi HPA007216.
MIMi 606121. gene.
neXtProti NX_O75575.
PharmGKBi PA164718123.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG252343.
GeneTreei ENSGT00390000014189.
HOGENOMi HOG000244081.
HOVERGENi HBG023697.
InParanoidi O75575.
OMAi YLSKTPC.
PhylomeDBi O75575.
TreeFami TF323294.

Miscellaneous databases

GeneWikii RCP9.
GenomeRNAii 27297.
NextBioi 50270.
PROi O75575.
SOURCEi Search...

Gene expression databases

Bgeei O75575.
ExpressionAtlasi O75575. baseline and differential.
Genevestigatori O75575.

Family and domain databases

InterProi IPR010997. HRDC-like.
IPR005574. RNA_pol_II_Rpb4.
IPR006590. RNA_pol_II_Rpb4_core.
[Graphical view ]
Pfami PF03874. RNA_pol_Rpb4. 1 hit.
[Graphical view ]
SMARTi SM00657. RPOL4c. 1 hit.
[Graphical view ]
SUPFAMi SSF47819. SSF47819. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Human CGRP-receptor component protein (RCP) ORF."
    Luebke A.E., Dahl G.P., Dickerson I.M.
    Submitted (JUN-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
  2. "Testes exhibit elevated expression of calcitonin gene-related peptide receptor component protein."
    Balkan W., Oates E.L., Howard G.A., Roos B.A.
    Endocrinology 140:1459-1469(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY.
  3. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1; 2 AND 3).
    Tissue: Adrenal gland, Brain and Kidney.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4).
    Tissue: Fetal muscle.
  5. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Tissue: Adipose tissue.
  6. "The DNA sequence of human chromosome 7."
    Hillier L.W., Fulton R.S., Fulton L.A., Graves T.A., Pepin K.H., Wagner-McPherson C., Layman D., Maas J., Jaeger S., Walker R., Wylie K., Sekhon M., Becker M.C., O'Laughlin M.D., Schaller M.E., Fewell G.A., Delehaunty K.D., Miner T.L.
    , Nash W.E., Cordes M., Du H., Sun H., Edwards J., Bradshaw-Cordum H., Ali J., Andrews S., Isak A., Vanbrunt A., Nguyen C., Du F., Lamar B., Courtney L., Kalicki J., Ozersky P., Bielicki L., Scott K., Holmes A., Harkins R., Harris A., Strong C.M., Hou S., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Leonard S., Rohlfing T., Rock S.M., Tin-Wollam A.-M., Abbott A., Minx P., Maupin R., Strowmatt C., Latreille P., Miller N., Johnson D., Murray J., Woessner J.P., Wendl M.C., Yang S.-P., Schultz B.R., Wallis J.W., Spieth J., Bieri T.A., Nelson J.O., Berkowicz N., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Bedell J.A., Mardis E.R., Clifton S.W., Chissoe S.L., Marra M.A., Raymond C., Haugen E., Gillett W., Zhou Y., James R., Phelps K., Iadanoto S., Bubb K., Simms E., Levy R., Clendenning J., Kaul R., Kent W.J., Furey T.S., Baertsch R.A., Brent M.R., Keibler E., Flicek P., Bork P., Suyama M., Bailey J.A., Portnoy M.E., Torrents D., Chinwalla A.T., Gish W.R., Eddy S.R., McPherson J.D., Olson M.V., Eichler E.E., Green E.D., Waterston R.H., Wilson R.K.
    Nature 424:157-164(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  7. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  8. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Tissue: Testis.
  9. "Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits."
    Hu P., Wu S., Sun Y., Yuan C.-C., Kobayashi R., Myers M.P., Hernandez N.
    Mol. Cell. Biol. 22:8044-8055(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION IN THE RNA POL III COMPLEX, IDENTIFICATION BY MASS SPECTROMETRY, INTERACTION WITH RPC8.
  10. "An Rpb4/Rpb7-like complex in yeast RNA polymerase III contains the orthologue of mammalian CGRP-RCP."
    Siaut M., Zaros C., Levivier E., Ferri M.L., Court M., Werner M., Callebaut I., Thuriaux P., Sentenac A., Conesa C.
    Mol. Cell. Biol. 23:195-205(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION IN THE RNA POL III COMPLEX, IDENTIFICATION BY MASS SPECTROMETRY.

Entry informationi

Entry nameiRPC9_HUMAN
AccessioniPrimary (citable) accession number: O75575
Secondary accession number(s): A8MUZ4
, A8MW23, B2R4H4, B4E198, Q3KRA3, Q5HYF1, Q8IXL4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 10, 2002
Last sequence update: November 1, 1998
Last modified: October 29, 2014
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 7
    Human chromosome 7: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3