O75309 (CAD16_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 116.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Cadherin-16 Alternative name(s): Kidney-specific cadherin Short name=Ksp-cadherin | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 829 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. |
| Subcellular location | Cell membrane; Single-pass type I membrane protein Probable. |
| Tissue specificity | Kidney specific. |
| Domain | Three calcium ions are usually bound at the interface of each cadherin domain and rigidify the connections, imparting a strong curvature to the full-length ectodomain By similarity. |
| Sequence similarities | Contains 6 cadherin domains. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Cell adhesion |
| Cellular component | Cell membrane Membrane |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Repeat Signal Transmembrane Transmembrane helix |
| Ligand | Calcium Metal-binding |
| PTM | Glycoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | cell adhesion Traceable author statement Ref.1. Source: ProtInc homophilic cell adhesionInferred from electronic annotation. Source: InterPro |
| Cellular_component | integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membraneInferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular_function | calcium ion binding Inferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: O75309-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: O75309-2) The sequence of this isoform differs from the canonical sequence as follows: 642-663: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 3 (identifier: O75309-3) The sequence of this isoform differs from the canonical sequence as follows: 121-217: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 4 (identifier: O75309-4) The sequence of this isoform differs from the canonical sequence as follows: 642-680: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 18 | 18 | Potential | ||||||
| Chain | 19 – 829 | 811 | Cadherin-16 | PRO_0000003809 | |||||
Regions | |||||||||
| Topological domain | 19 – 786 | 768 | Extracellular Potential | ||||||
| Transmembrane | 787 – 807 | 21 | Helical; Potential | ||||||
| Topological domain | 808 – 829 | 22 | Cytoplasmic Potential | ||||||
| Domain | 25 – 126 | 102 | Cadherin 1 | ||||||
| Domain | 131 – 235 | 105 | Cadherin 2 | ||||||
| Domain | 242 – 336 | 95 | Cadherin 3 | ||||||
| Domain | 341 – 449 | 109 | Cadherin 4 | ||||||
| Domain | 455 – 564 | 110 | Cadherin 5 | ||||||
| Domain | 569 – 665 | 97 | Cadherin 6 | ||||||
| Region | 666 – 786 | 121 | Ectodomain G | ||||||
Amino acid modifications | |||||||||
| Glycosylation | 517 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 602 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 722 | 1 | N-linked (GlcNAc...) Potential | ||||||
Natural variations | |||||||||
| Alternative sequence | 121 – 217 | 97 | Missing in isoform 3. | VSP_046027 | |||||
| Alternative sequence | 642 – 680 | 39 | Missing in isoform 4. | VSP_046467 | |||||
| Alternative sequence | 642 – 663 | 22 | Missing in isoform 2. | VSP_013354 | |||||
| Natural variant | 191 | 1 | L → F. Corresponds to variant rs2271024 [ dbSNP | Ensembl ]. | VAR_021870 | |||||
| Natural variant | 257 | 1 | H → Y. Corresponds to variant rs2271023 [ dbSNP | Ensembl ]. | VAR_021871 | |||||
| Natural variant | 717 | 1 | R → H. Corresponds to variant rs34621310 [ dbSNP | Ensembl ]. | VAR_061058 | |||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "cDNA cloning and chromosomal localization of the human and mouse isoforms of Ksp-cadherin." Thomson R.B., Ward D.C., Quaggin S.E., Igarashi P., Muckler Z.E., Aronson P.S. Genomics 51:445-451(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [2] | "The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment." Clark H.F., Gurney A.L., Abaya E., Baker K., Baldwin D.T., Brush J., Chen J., Chow B., Chui C., Crowley C., Currell B., Deuel B., Dowd P., Eaton D., Foster J.S., Grimaldi C., Gu Q., Hass P.E. Gray A.M.Genome Res. 13:2265-2270(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4). Tissue: Kidney. |
| [4] | Suzuki Y., Sugano S., Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S. Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). Tissue: Kidney. |
| [5] | "The sequence and analysis of duplication-rich human chromosome 16." Martin J., Han C., Gordon L.A., Terry A., Prabhakar S., She X., Xie G., Hellsten U., Chan Y.M., Altherr M., Couronne O., Aerts A., Bajorek E., Black S., Blumer H., Branscomb E., Brown N.C., Bruno W.J. Pennacchio L.A.Nature 432:988-994(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Lung and Spleen. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF016272 mRNA. Translation: AAC34255.1. AY358911 mRNA. Translation: AAQ89270.1. AK225544 mRNA. No translation available. AK298255 mRNA. Translation: BAG60520.1. AC009084 Genomic DNA. No translation available. BC027912 mRNA. Translation: AAH27912.1. |
| IPI | IPI00025240. IPI00556336. IPI01008732. |
| RefSeq | NP_001191673.1. NM_001204744.1. NP_001191674.1. NM_001204745.1. NP_001191675.1. NM_001204746.1. NP_004053.1. NM_004062.3. |
| UniGene | Hs.513660. |
3D structure databases | |
| ProteinModelPortal | O75309. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | O75309. 2 interactions. |
PTM databases | |
| PhosphoSite | O75309. |
Proteomic databases | |
| PaxDb | O75309. |
| PRIDE | O75309. |
Protocols and materials databases | |
| DNASU | 1014. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000299752; ENSP00000299752; ENSG00000166589. ENST00000394055; ENSP00000377619; ENSG00000166589. ENST00000565796; ENSP00000454784; ENSG00000166589. ENST00000568632; ENSP00000455263; ENSG00000166589. |
| GeneID | 1014. |
| KEGG | hsa:1014. |
| UCSC | uc002eql.3. human. uc010cdy.3. human. |
Organism-specific databases | |
| CTD | 1014. |
| GeneCards | GC16M066942. |
| HGNC | HGNC:1755. CDH16. |
| HPA | CAB013526. |
| MIM | 603118. gene. |
| neXtProt | NX_O75309. |
| PharmGKB | PA26289. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG259000. |
| HOGENOM | HOG000231613. |
| HOVERGEN | HBG050766. |
| InParanoid | O75309. |
| KO | K06810. |
| OMA | DENDQVP. |
| OrthoDB | EOG4DJJVT. |
| PhylomeDB | O75309. |
Gene expression databases | |
| ArrayExpress | O75309. |
| Bgee | O75309. |
| CleanEx | HS_CDH16. |
| Genevestigator | O75309. |
| GermOnline | ENSG00000166589. Homo sapiens. |
Family and domain databases | |
| Gene3D | 2.60.40.60. 6 hits. |
| InterPro | IPR002126. Cadherin. IPR015919. Cadherin-like. IPR020894. Cadherin_CS. [Graphical view] |
| Pfam | PF00028. Cadherin. 4 hits. [Graphical view] |
| PRINTS | PR00205. CADHERIN. |
| SMART | SM00112. CA. 6 hits. [Graphical view] |
| SUPFAM | SSF49313. Cadherin. 6 hits. |
| PROSITE | PS00232. CADHERIN_1. 2 hits. PS50268. CADHERIN_2. 5 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 1014. |
| NextBio | 4261. |
| SOURCE | Search... |
Entry information
| Entry name | CAD16_HUMAN | ||||||||
| Accession | Primary (citable) accession number: O75309 Secondary accession number(s): B4DPA8, H3BPD3, Q6UW93 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 16 Human chromosome 16: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
