O75096 (LRP4_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 113.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Low-density lipoprotein receptor-related protein 4 Short name=LRP-4 Alternative name(s): Multiple epidermal growth factor-like domains 7 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1905 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes. Ref.5 Ref.6 |
| Subunit structure | Homooligomer. Interacts with MUSK; the heterodimer forms an AGRIN receptor complex that binds AGRIN resulting in activation of MUSK By similarity. Interacts (via the extracellular domain) with SOST; the interaction facilitates the inhibition of Wnt signaling. Ref.6 |
| Subcellular location | Membrane; Single-pass type I membrane protein Potential. |
| Tissue specificity | Expressed in bone; present in osteoblasts and osteocytes. No expression is observed in osteoclast. Expressed in several regions of the brain. Ref.6 |
| Involvement in disease | Cenani-Lenz syndactyly syndrome (CLSS) [MIM:212780]: A congenital malformation syndrome defined as complete and complex syndactyly of the hands combined with malformations of the forearm bones and similar manifestations in the lower limbs. It is characterized by fusion and disorganization of metacarpal and phalangeal bones, radius and ulnar shortening, radioulnar synostosis, and severe syndactyly of hands and feet. Sclerosteosis 2 (SOST2) [MIM:614305]: A sclerosing bone dysplasia characterized by a generalized hyperostosis and sclerosis leading to a markedly thickened skull, with mandible, ribs, clavicles and all long bones also being affected. Due to narrowing of the foramina of the cranial nerves, facial nerve palsy, hearing loss and atrophy of the optic nerves can occur. Sclerosteosis is clinically and radiologically very similar to van Buchem disease, mainly differentiated by hand malformations and a large stature in sclerosteosis patients. |
| Sequence similarities | Belongs to the LDLR family. Contains 3 EGF-like domains. Contains 8 LDL-receptor class A domains. Contains 20 LDL-receptor class B repeats. |
| Sequence caution | The sequence BAE19679.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 20 | 20 | Potential | ||||||||
| Chain | 21 – 1905 | 1885 | Low-density lipoprotein receptor-related protein 4 | PRO_0000017325 | |||||||
Regions | |||||||||||
| Topological domain | 21 – 1725 | 1705 | Extracellular Potential | ||||||||
| Transmembrane | 1726 – 1746 | 21 | Helical; Potential | ||||||||
| Topological domain | 1747 – 1905 | 159 | Cytoplasmic Potential | ||||||||
| Domain | 26 – 67 | 42 | LDL-receptor class A 1 | ||||||||
| Domain | 70 – 106 | 37 | LDL-receptor class A 2 | ||||||||
| Domain | 109 – 144 | 36 | LDL-receptor class A 3 | ||||||||
| Domain | 147 – 183 | 37 | LDL-receptor class A 4 | ||||||||
| Domain | 190 – 226 | 37 | LDL-receptor class A 5 | ||||||||
| Domain | 230 – 266 | 37 | LDL-receptor class A 6 | ||||||||
| Domain | 269 – 305 | 37 | LDL-receptor class A 7 | ||||||||
| Domain | 311 – 350 | 40 | LDL-receptor class A 8 | ||||||||
| Domain | 354 – 394 | 41 | EGF-like 1; calcium-binding Potential | ||||||||
| Domain | 395 – 434 | 40 | EGF-like 2; calcium-binding Potential | ||||||||
| Repeat | 480 – 522 | 43 | LDL-receptor class B 1 | ||||||||
| Repeat | 523 – 565 | 43 | LDL-receptor class B 2 | ||||||||
| Repeat | 566 – 609 | 44 | LDL-receptor class B 3 | ||||||||
| Repeat | 610 – 652 | 43 | LDL-receptor class B 4 | ||||||||
| Repeat | 653 – 693 | 41 | LDL-receptor class B 5 | ||||||||
| Domain | 698 – 737 | 40 | EGF-like 3 | ||||||||
| Repeat | 785 – 827 | 43 | LDL-receptor class B 6 | ||||||||
| Repeat | 828 – 870 | 43 | LDL-receptor class B 7 | ||||||||
| Repeat | 871 – 914 | 44 | LDL-receptor class B 8 | ||||||||
| Repeat | 915 – 956 | 42 | LDL-receptor class B 9 | ||||||||
| Repeat | 957 – 998 | 42 | LDL-receptor class B 10 | ||||||||
| Repeat | 1093 – 1135 | 43 | LDL-receptor class B 11 | ||||||||
| Repeat | 1136 – 1178 | 43 | LDL-receptor class B 12 | ||||||||
| Repeat | 1179 – 1222 | 44 | LDL-receptor class B 13 | ||||||||
| Repeat | 1223 – 1263 | 41 | LDL-receptor class B 14 | ||||||||
| Repeat | 1264 – 1306 | 43 | LDL-receptor class B 15 | ||||||||
| Repeat | 1397 – 1439 | 43 | LDL-receptor class B 16 | ||||||||
| Repeat | 1440 – 1482 | 43 | LDL-receptor class B 17 | ||||||||
| Repeat | 1483 – 1526 | 44 | LDL-receptor class B 18 | ||||||||
| Repeat | 1527 – 1568 | 42 | LDL-receptor class B 19 | ||||||||
| Repeat | 1569 – 1610 | 42 | LDL-receptor class B 20 | ||||||||
| Motif | 1766 – 1769 | 4 | Endocytosis signal Potential | ||||||||
Amino acid modifications | |||||||||||
| Modified residue | 1887 | 1 | Phosphoserine By similarity | ||||||||
| Glycosylation | 264 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 498 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 719 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 901 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1077 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1415 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1467 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Disulfide bond | 27 ↔ 44 | By similarity | |||||||||
| Disulfide bond | 34 ↔ 57 | By similarity | |||||||||
| Disulfide bond | 51 ↔ 66 | By similarity | |||||||||
| Disulfide bond | 71 ↔ 83 | By similarity | |||||||||
| Disulfide bond | 78 ↔ 96 | By similarity | |||||||||
| Disulfide bond | 90 ↔ 105 | By similarity | |||||||||
| Disulfide bond | 110 ↔ 122 | By similarity | |||||||||
| Disulfide bond | 117 ↔ 135 | By similarity | |||||||||
| Disulfide bond | 129 ↔ 143 | By similarity | |||||||||
| Disulfide bond | 148 ↔ 160 | By similarity | |||||||||
| Disulfide bond | 155 ↔ 173 | By similarity | |||||||||
| Disulfide bond | 167 ↔ 182 | By similarity | |||||||||
| Disulfide bond | 191 ↔ 203 | By similarity | |||||||||
| Disulfide bond | 198 ↔ 216 | By similarity | |||||||||
| Disulfide bond | 210 ↔ 225 | By similarity | |||||||||
| Disulfide bond | 231 ↔ 243 | By similarity | |||||||||
| Disulfide bond | 238 ↔ 256 | By similarity | |||||||||
| Disulfide bond | 250 ↔ 265 | By similarity | |||||||||
| Disulfide bond | 270 ↔ 282 | By similarity | |||||||||
| Disulfide bond | 277 ↔ 295 | By similarity | |||||||||
| Disulfide bond | 289 ↔ 304 | By similarity | |||||||||
| Disulfide bond | 312 ↔ 324 | By similarity | |||||||||
| Disulfide bond | 319 ↔ 337 | By similarity | |||||||||
| Disulfide bond | 331 ↔ 349 | By similarity | |||||||||
| Disulfide bond | 358 ↔ 369 | By similarity | |||||||||
| Disulfide bond | 365 ↔ 378 | By similarity | |||||||||
| Disulfide bond | 380 ↔ 393 | By similarity | |||||||||
| Disulfide bond | 399 ↔ 409 | By similarity | |||||||||
| Disulfide bond | 405 ↔ 418 | By similarity | |||||||||
| Disulfide bond | 420 ↔ 433 | By similarity | |||||||||
| Disulfide bond | 702 ↔ 713 | By similarity | |||||||||
| Disulfide bond | 709 ↔ 722 | By similarity | |||||||||
| Disulfide bond | 724 ↔ 736 | By similarity | |||||||||
Natural variations | |||||||||||
| Natural variant | 137 | 1 | D → N in CLSS; abolishes the antagonistic effect of LRP4 on LRP6-mediated activation of Wnt signaling. Ref.5 | VAR_063776 | |||||||
| Natural variant | 160 | 1 | C → Y in CLSS; abolishes the antagonistic effect of LRP4 on LRP6-mediated activation of Wnt signaling. Ref.5 | VAR_063777 | |||||||
| Natural variant | 314 | 1 | L → S. Corresponds to variant rs7926667 [ dbSNP | Ensembl ]. | VAR_058290 | |||||||
| Natural variant | 449 | 1 | D → N in CLSS; abolishes the antagonistic effect of LRP4 on LRP6-mediated activation of Wnt signaling. Ref.5 | VAR_063778 | |||||||
| Natural variant | 461 | 1 | T → P in CLSS. Ref.5 | VAR_063779 | |||||||
| Natural variant | 473 | 1 | L → F in CLSS; abolishes the antagonistic effect of LRP4 on LRP6-mediated activation of Wnt signaling. Ref.5 | VAR_063780 | |||||||
| Natural variant | 529 | 1 | D → N in CLSS; abolishes the antagonistic effect of LRP4 on LRP6-mediated activation of Wnt signaling. Ref.5 | VAR_063781 | |||||||
| Natural variant | 1017 | 1 | C → R in CLSS. Ref.5 | VAR_063782 | |||||||
| Natural variant | 1086 | 1 | I → V. Ref.1 Ref.2 Ref.4 Corresponds to variant rs6485702 [ dbSNP | Ensembl ]. | VAR_057955 | |||||||
| Natural variant | 1170 | 1 | R → W in SOST2; impairs the interaction with SOST; loss of function as facilitator of SOST-mediated inhibition of Wnt signaling. Ref.6 | VAR_066630 | |||||||
| Natural variant | 1186 | 1 | W → S in SOST2; impairs the interaction with SOST; loss of function as facilitator of SOST-mediated inhibition of Wnt signaling. Ref.6 | VAR_066631 | |||||||
| Natural variant | 1203 | 1 | A → V. Corresponds to variant rs2306033 [ dbSNP | Ensembl ]. | VAR_058291 | |||||||
| Natural variant | 1238 | 1 | A → T. Corresponds to variant rs2306031 [ dbSNP | Ensembl ]. | VAR_058292 | |||||||
| Natural variant | 1554 | 1 | S → G. Ref.1 Ref.2 Ref.4 Corresponds to variant rs2306029 [ dbSNP | Ensembl ]. | VAR_057956 | |||||||
| Natural variant | 1646 | 1 | R → Q. Ref.1 Ref.2 Ref.4 Corresponds to variant rs3816614 [ dbSNP | Ensembl ]. | VAR_057957 | |||||||
Experimental info | |||||||||||
| Sequence conflict | 1472 – 1475 | 4 | EPRA → D in BAE19679. Ref.2 | ||||||||
| Sequence conflict | 1478 | 1 | V → A in BAE19679. Ref.2 | ||||||||
| Sequence conflict | 1862 | 1 | T → M in BAD83615. Ref.1 | ||||||||
| Sequence conflict | 1862 | 1 | T → M in BAA32468. Ref.2 | ||||||||
Sequences
| ||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "Low density lipoprotein receptor-related protein 10." Ishikawa K., Fujimoto H., Kim D., Saeki S. Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANTS VAL-1086; GLY-1554 AND GLN-1646. Tissue: Brain. |
| [2] | "Identification of high-molecular-weight proteins with multiple EGF-like motifs by motif-trap screening." Nakayama M., Nakajima D., Nagase T., Nomura N., Seki N., Ohara O. Genomics 51:27-34(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANTS VAL-1086; GLY-1554 AND GLN-1646. Tissue: Brain. |
| [3] | "Human chromosome 11 DNA sequence and analysis including novel gene identification." Taylor T.D., Noguchi H., Totoki Y., Toyoda A., Kuroki Y., Dewar K., Lloyd C., Itoh T., Takeda T., Kim D.-W., She X., Barlow K.F., Bloom T., Bruford E., Chang J.L., Cuomo C.A., Eichler E., FitzGerald M.G. Sakaki Y.Nature 440:497-500(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANTS VAL-1086; GLY-1554 AND GLN-1646. Tissue: Muscle. |
| [5] | "LRP4 mutations alter Wnt/beta-catenin signaling and cause limb and kidney malformations in Cenani-Lenz syndrome." Li Y., Pawlik B., Elcioglu N., Aglan M., Kayserili H., Yigit G., Percin F., Goodman F., Nurnberg G., Cenani A., Urquhart J., Chung B.D., Ismail S., Amr K., Aslanger A.D., Becker C., Netzer C., Scambler P. Wollnik B.Am. J. Hum. Genet. 86:696-706(2010) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION IN THE REGULATION OF CANONICAL WTN SIGNALING, VARIANTS CLSS ASN-137; TYR-160; ASN-449; PRO-461; PHE-473; ASN-529 AND ARG-1017, CHARACTERIZATION OF VARIANTS CLSS ASN-137; TYR-160; ASN-449; PHE-473 AND ASN-529. |
| [6] | "Bone overgrowth-associated mutations in the LRP4 gene impair sclerostin facilitator function." Leupin O., Piters E., Halleux C., Hu S., Kramer I., Morvan F., Bouwmeester T., Schirle M., Bueno-Lozano M., Fuentes F.J., Itin P.H., Boudin E., de Freitas F., Jennes K., Brannetti B., Charara N., Ebersbach H., Geisse S. Kneissel M.J. Biol. Chem. 286:19489-19500(2011) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH SOST, TISSUE SPECIFICITY, MASS SPECTROMETRY, VARIANTS SOST2 TRP-1170 AND SER-1186, CHARACTERIZATION OF VARIANTS SOST2 TRP-1170 AND SER-1186. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AB084910 mRNA. Translation: BAD83615.1. AB011540 mRNA. Translation: BAA32468.1. AB231861 mRNA. Translation: BAE19679.1. Different initiation. AC021573 Genomic DNA. No translation available. BC037360 mRNA. Translation: AAH37360.1. BC041048 mRNA. Translation: AAH41048.1. BC136667 mRNA. Translation: AAI36668.1. BC136668 mRNA. Translation: AAI36669.1. |
| IPI | IPI00930747. |
| RefSeq | NP_002325.2. NM_002334.3. |
| UniGene | Hs.4930. |
3D structure databases | |
| ProteinModelPortal | O75096. |
| SMR | O75096. Positions 27-1640. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | O75096. 3 interactions. |
| STRING | 9606.ENSP00000367888. |
PTM databases | |
| PhosphoSite | O75096. |
Proteomic databases | |
| PaxDb | O75096. |
| PRIDE | O75096. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000378623; ENSP00000367888; ENSG00000134569. |
| GeneID | 4038. |
| KEGG | hsa:4038. |
| UCSC | uc001ndn.4. human. |
Organism-specific databases | |
| CTD | 4038. |
| GeneCards | GC11M046919. |
| H-InvDB | HIX0009607. |
| HGNC | HGNC:6696. LRP4. |
| HPA | HPA011934. HPA012300. |
| MIM | 212780. phenotype. 604270. gene. 614305. phenotype. |
| neXtProt | NX_O75096. |
| Orphanet | 3258. Cenani-Lenz syndactyly. 3152. Sclerosteosis. |
| PharmGKB | PA30454. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG235850. |
| HOGENOM | HOG000047507. |
| HOVERGEN | HBG049163. |
| InParanoid | O75096. |
| OMA | PAPPCNL. |
| OrthoDB | EOG405S05. |
Gene expression databases | |
| ArrayExpress | O75096. |
| Bgee | O75096. |
| CleanEx | HS_LRP4. |
| Genevestigator | O75096. |
| GermOnline | ENSG00000134569. Homo sapiens. |
Family and domain databases | |
| Gene3D | 2.120.10.30. 4 hits. 4.10.400.10. 8 hits. |
| InterPro | IPR011042. 6-blade_b-propeller_TolB-like. IPR026823. cEGF. IPR000742. EG-like_dom. IPR001881. EGF-like_Ca-bd. IPR013032. EGF-like_CS. IPR000152. EGF-type_Asp/Asn_hydroxyl_site. IPR018097. EGF_Ca-bd_CS. IPR009030. Growth_fac_rcpt. IPR023415. LDLR_class-A_CS. IPR000033. LDLR_classB_rpt. IPR002172. LDrepeatLR_classA_rpt. [Graphical view] |
| Pfam | PF12662. cEGF. 1 hit. PF00057. Ldl_recept_a. 8 hits. PF00058. Ldl_recept_b. 16 hits. [Graphical view] |
| SMART | SM00181. EGF. 4 hits. SM00179. EGF_CA. 1 hit. SM00192. LDLa. 8 hits. SM00135. LY. 20 hits. [Graphical view] |
| SUPFAM | SSF57184. Grow_fac_recept. 1 hit. SSF57424. LDL_rcpt_classA_cys-rich. 8 hits. |
| PROSITE | PS00010. ASX_HYDROXYL. 1 hit. PS00022. EGF_1. False negative. PS01186. EGF_2. 3 hits. PS50026. EGF_3. False negative. PS01187. EGF_CA. 1 hit. PS01209. LDLRA_1. 8 hits. PS50068. LDLRA_2. 8 hits. PS51120. LDLRB. 20 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 4038. |
| NextBio | 15818. |
| SOURCE | Search... |
Entry information
| Entry name | LRP4_HUMAN | ||||||||
| Accession | Primary (citable) accession number: O75096 Secondary accession number(s): B2RN39, Q4AC85, Q5KTZ5 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 11 Human chromosome 11: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
