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Protein

Uncharacterized RNA-binding protein C4F6.14

Gene

SPBC4F6.14

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized RNA-binding protein C4F6.14
Gene namesi
ORF Names:SPBC4F6.14
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC4F6.14.
PomBaseiSPBC4F6.14.

Subcellular locationi

GO - Cellular componenti

  • nucleolus Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 674674Uncharacterized RNA-binding protein C4F6.14PRO_0000310817Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei223 – 2231Phosphoserine1 Publication
Modified residuei225 – 2251Phosphoserine1 Publication
Modified residuei242 – 2421Phosphoserine1 Publication
Modified residuei247 – 2471Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiO74400.

PTM databases

iPTMnetiO74400.

Interactioni

Protein-protein interaction databases

BioGridi277388. 5 interactions.

Structurei

3D structure databases

ProteinModelPortaliO74400.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini5 – 8379RRM 1PROSITE-ProRule annotationAdd
BLAST
Domaini107 – 18579RRM 2PROSITE-ProRule annotationAdd
BLAST
Domaini277 – 386110RRM 3PROSITE-ProRule annotationAdd
BLAST
Domaini486 – 57994RRM 4PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 4 RRM (RNA recognition motif) domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

HOGENOMiHOG000187841.
InParanoidiO74400.
KOiK14573.
OMAiCIVLHPD.
OrthoDBiEOG092C3SCB.
PhylomeDBiO74400.

Family and domain databases

Gene3Di3.30.70.330. 5 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR003954. RRM_dom_euk.
[Graphical view]
PfamiPF00076. RRM_1. 4 hits.
[Graphical view]
SMARTiSM00360. RRM. 4 hits.
SM00361. RRM_1. 2 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 4 hits.
PROSITEiPS50102. RRM. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O74400-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNSNSTLFVR NLAFQTKQDD LTNFFSDVGP IKHAVVVTNP ETGENRGYGF
60 70 80 90 100
VTFSMLEDAQ RAAKELKNKK LHGRILRLDF ATPRKRSEVD TDQNKAVKKT
110 120 130 140 150
IRQDNRPRLI IRNLPWSIKK PQHLEPHFSK FGKVREIKIP TKGGGRMCGF
160 170 180 190 200
AFVWMKDRKA AEEAMNSLNG TEIDGRPIAV DWAVSKDAFE ATTLKDASSE
210 220 230 240 250
EENKEFVSDE GHSIVTEDAS ADSESEEEVD GHSEGKELAG ESEEEGSNVD
260 270 280 290 300
DVEDSGDSSS DKNSINHEIR DNEGLEDTVF VRNLLFECTE QELYNHFRQF
310 320 330 340 350
GPLAYAKLVK DPATDRSLGR GFIKFRYEKD CQNCLEMASQ LPTQEPTEAE
360 370 380 390 400
KRFLPSVLVD EGIDTDSVSS RFLLHGRLLK VTSAVTRKEA SDINQKSLQE
410 420 430 440 450
RKQKMGKGVD RRHLFLLNEG KIAADHPLFN SLSETDKTLR SQSIAQRKKL
460 470 480 490 500
LEKNPTLHLS LNRLSIRNIS RHIDPKILAM LGRQAIRGFM DDVSKGLRAN
510 520 530 540 550
ITEEEENLDK GHRLKRGKSG GVLKQAKVET EKAGAGRSKG FGFMQFISHK
560 570 580 590 600
YALMALRWLN GREITVKKII DAEIEWARKH KIPEPQLPNI DYNDRPRRLI
610 620 630 640 650
VEFAIENIQV VKRRQEKEKS FRQKAKQLKQ QEDEDNLKRK RSESDVEDNE
660 670
AKEKQAKVAR IIQRKRMKRR SRKN
Length:674
Mass (Da):77,034
Last modified:November 1, 1998 - v1
Checksum:i7C08D543F0FC2CDD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA20734.1.
PIRiT40511.
RefSeqiNP_596114.1. NM_001022031.2.

Genome annotation databases

EnsemblFungiiSPBC4F6.14.1; SPBC4F6.14.1:pep; SPBC4F6.14.
GeneIDi2540871.
KEGGispo:SPBC4F6.14.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA20734.1.
PIRiT40511.
RefSeqiNP_596114.1. NM_001022031.2.

3D structure databases

ProteinModelPortaliO74400.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi277388. 5 interactions.

PTM databases

iPTMnetiO74400.

Proteomic databases

MaxQBiO74400.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPBC4F6.14.1; SPBC4F6.14.1:pep; SPBC4F6.14.
GeneIDi2540871.
KEGGispo:SPBC4F6.14.

Organism-specific databases

EuPathDBiFungiDB:SPBC4F6.14.
PomBaseiSPBC4F6.14.

Phylogenomic databases

HOGENOMiHOG000187841.
InParanoidiO74400.
KOiK14573.
OMAiCIVLHPD.
OrthoDBiEOG092C3SCB.
PhylomeDBiO74400.

Miscellaneous databases

PROiO74400.

Family and domain databases

Gene3Di3.30.70.330. 5 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR003954. RRM_dom_euk.
[Graphical view]
PfamiPF00076. RRM_1. 4 hits.
[Graphical view]
SMARTiSM00360. RRM. 4 hits.
SM00361. RRM_1. 2 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 4 hits.
PROSITEiPS50102. RRM. 4 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYOCE_SCHPO
AccessioniPrimary (citable) accession number: O74400
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: November 1, 1998
Last modified: September 7, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.