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Protein

30S ribosomal protein S13

Gene

rps13

Organism
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciPHOR70601:G1G39-1592-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S13UniRule annotation
Gene namesi
Name:rps13UniRule annotation
Ordered Locus Names:PH1641
OrganismiPyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Taxonomic identifieri70601 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000752 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001321881 – 14830S ribosomal protein S13Add BLAST148

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.UniRule annotation

Protein-protein interaction databases

STRINGi70601.PH1641

Structurei

3D structure databases

ProteinModelPortaliO74021
SMRiO74021
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uS13 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG01722 Archaea
COG0099 LUCA
HOGENOMiHOG000039877
KOiK02952
OMAiHKRGQKV
OrthoDBiPOG093Z0FBQ

Family and domain databases

Gene3Di4.10.910.10, 1 hit
HAMAPiMF_01315 Ribosomal_S13_S18, 1 hit
InterProiView protein in InterPro
IPR027437 30s_Rbsml_prot_S13_C
IPR001892 Ribosomal_S13
IPR010979 Ribosomal_S13-like_H2TH
IPR019977 Ribosomal_S13_archaeal
IPR018269 Ribosomal_S13_CS
PfamiView protein in Pfam
PF00416 Ribosomal_S13, 1 hit
PIRSFiPIRSF002134 Ribosomal_S13, 1 hit
SUPFAMiSSF46946 SSF46946, 1 hit
TIGRFAMsiTIGR03629 uS13_arch, 1 hit
PROSITEiView protein in PROSITE
PS00646 RIBOSOMAL_S13_1, 1 hit
PS50159 RIBOSOMAL_S13_2, 1 hit

Sequencei

Sequence statusi: Complete.

O74021-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVDFRHIVRV AGVDLDGNKQ LRWALTAIKG VGINFATMVC RVAGLDPFMK
60 70 80 90 100
AGYLTDEQVK KIEEILQDPV SHGIPRWAVN RPKDYETGKD LHLITAKLDM
110 120 130 140
AIREDIMRLR RIRAYRGIRH ELGLPVRGQR TRSNFRRGQT VGVSKKKK
Length:148
Mass (Da):16,947
Last modified:November 1, 1998 - v1
Checksum:iEC64315D66C91AE6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA Translation: BAA30753.1
PIRiA71044
RefSeqiWP_010885709.1, NC_000961.1

Genome annotation databases

EnsemblBacteriaiBAA30753; BAA30753; BAA30753
GeneIDi1442490
KEGGipho:PH1641

Similar proteinsi

Entry informationi

Entry nameiRS13_PYRHO
AccessioniPrimary (citable) accession number: O74021
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: November 1, 1998
Last modified: April 25, 2018
This is version 94 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health