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Protein

Transporter

Gene
N/A
Organism
Raja sp.
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

SymportUniRule annotationSAAS annotation, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
TransporterUniRule annotation
OrganismiRaja sp.Imported
Taxonomic identifieri30479 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataChondrichthyesElasmobranchiiBatoideaRajiformesRajidaeRaja

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei52 – 7019HelicalSequence analysisAdd
BLAST
Transmembranei82 – 10322HelicalSequence analysisAdd
BLAST
Transmembranei124 – 15128HelicalSequence analysisAdd
BLAST
Transmembranei209 – 22820HelicalSequence analysisAdd
BLAST
Transmembranei240 – 26324HelicalSequence analysisAdd
BLAST
Transmembranei283 – 30826HelicalSequence analysisAdd
BLAST
Transmembranei320 – 34526HelicalSequence analysisAdd
BLAST
Transmembranei379 – 40022HelicalSequence analysisAdd
BLAST
Transmembranei421 – 43919HelicalSequence analysisAdd
BLAST
Transmembranei451 – 47626HelicalSequence analysisAdd
BLAST
Transmembranei497 – 51620HelicalSequence analysisAdd
BLAST
Transmembranei536 – 55621HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Structurei

3D structure databases

ProteinModelPortaliO73771.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. [View classification]UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

HOVERGENiHBG071421.

Family and domain databases

InterProiIPR000175. Na/ntran_symport.
IPR002980. Na/ntran_symport_GABA_GAT1.
[Graphical view]
PANTHERiPTHR11616. PTHR11616. 1 hit.
PfamiPF00209. SNF. 1 hit.
[Graphical view]
PRINTSiPR01195. GAT1TRNSPORT.
PR00176. NANEUSMPORT.
PROSITEiPS00610. NA_NEUROTRAN_SYMP_1. 1 hit.
PS00754. NA_NEUROTRAN_SYMP_2. 1 hit.
PS50267. NA_NEUROTRAN_SYMP_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O73771-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATNSAKTPD GQISTELHDA PTSNDKPKTL VVKVQKSKPI PEREKWGGKY
60 70 80 90 100
EFLLSCVGYA IGLGNVWRFP YLCGKNGGGA FLIPYFLTLI FAGMPIFLLE
110 120 130 140 150
CSLGQYTSVG GLGIWRLAPM FKGVGLAAAV LSFWLNIYYV VIIAWAIYYL
160 170 180 190 200
YNSFTSELPW QSCGNAWNTE RCSSNYSMSN TTNFTNPIVE FWERNMHQLS
210 220 230 240 250
DGLDQPGQIR APLAITLAIA WVLVYFCIWK GVSWTGKVVY FSAIYPYIML
260 270 280 290 300
LTLFFRGVTL PGAREGILFY ITPDFSRLTD SEVWLDAATQ IFFSYGLGLG
310 320 330 340 350
SLVALGSYNT FHNNIYRDSI IVCCINSTTS MFAGFVIFSI VGFMAHVTNR
360 370 380 390 400
PIADVAASGP GLAFLAYPEA VTQLPISPFW SILFFSMLLM LGIDSQFCTV
410 420 430 440 450
EGFITALVDE FPKLLRGRRE IFIAVVCIIS YLIGLSNITQ GGLYVFKLFD
460 470 480 490 500
YYSASGMSLL FLVFFETISI SWCYGVNRFF GNIEEMVGHK PCLWWKLCWS
510 520 530 540 550
FFTPIIVGGV FLFSAIQMKP LTMGSYIFPK WGQGVGWFMA LSSMMLIPGY
560 570 580 590
MGYLFLTSKG SLKQRLRLMT QPTEDTKCRE NGPEQPEHGI TPSDEAYM
Length:598
Mass (Da):67,006
Last modified:August 1, 1998 - v1
Checksum:iD5A092E1FD873D20
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF049108 mRNA. Translation: AAC05185.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF049108 mRNA. Translation: AAC05185.1.

3D structure databases

ProteinModelPortaliO73771.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

HOVERGENiHBG071421.

Family and domain databases

InterProiIPR000175. Na/ntran_symport.
IPR002980. Na/ntran_symport_GABA_GAT1.
[Graphical view]
PANTHERiPTHR11616. PTHR11616. 1 hit.
PfamiPF00209. SNF. 1 hit.
[Graphical view]
PRINTSiPR01195. GAT1TRNSPORT.
PR00176. NANEUSMPORT.
PROSITEiPS00610. NA_NEUROTRAN_SYMP_1. 1 hit.
PS00754. NA_NEUROTRAN_SYMP_2. 1 hit.
PS50267. NA_NEUROTRAN_SYMP_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Isolation and characterization of a skate retinal GABA transporter cDNA."
    Qian X., Malchow R.P., O'Brien J., Al-Ubaidi M.R.
    Mol. Vis. 0:0-0(1998)
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: RetinaImported.

Entry informationi

Entry nameiO73771_9CHON
AccessioniPrimary (citable) accession number: O73771
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: February 17, 2016
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.