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Protein

Capsid protein

Gene

AV1

Organism
Cotton leaf curl virus
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds the genomic viral ssDNA and shuttles it into and out of the cell nucleus.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Viral penetration into host nucleusUniRule annotation, Virus entry into host cell

Keywords - Ligandi

DNA-bindingUniRule annotation, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid proteinUniRule annotation
Alternative name(s):
Coat proteinUniRule annotation
Gene namesi
Name:AV1Imported
OrganismiCotton leaf curl virusImported
Taxonomic identifieri53010 [NCBI]
Taxonomic lineageiVirusesssDNA virusesGeminiviridaeBegomovirusunclassified Begomovirus

Subcellular locationi

  • Host nucleus UniRule annotation
  • Virion UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Host nucleusUniRule annotation, T=1 icosahedral capsid proteinUniRule annotation, Virion

Family & Domainsi

Sequence similaritiesi

Belongs to the geminiviridae capsid protein family.UniRule annotation

Keywords - Domaini

Zinc-fingerUniRule annotation

Family and domain databases

InterProiIPR000650. Gem_coat_AR1.
IPR000263. GV_A/BR1_coat.
[Graphical view]
PfamiPF00844. Gemini_coat. 1 hit.
[Graphical view]
PRINTSiPR00224. GEMCOATAR1.
PR00223. GEMCOATARBR1.

Sequencei

Sequence statusi: Complete.

O72703-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKRAADIVI STPASKVRRR LNFGSPYTSR AAAPIVRVTK QQAWTNRPMN
60 70 80 90 100
RKPRMYRMYR SPDVPKGCEG PCKVQSFESR HDVVHIGKVM CISDVTRGVG
110 120 130 140 150
LTHRIGKRFC VKSVYVLGKI WMDENIKTKN HTNSVMFFLV RDRRPVDKPQ
160 170 180 190 200
DFGEVFNMFD NEPSTATVKN SHRDRYQVLR KWHATVTGGQ YASKEQALVK
210 220 230 240 250
KFVRVNNYVV YNQQEAGKYE NHTENALMLY MACTHASNPV YATLKIRIYF

YDSVTN
Length:256
Mass (Da):29,581
Last modified:August 1, 1998 - v1
Checksum:iC1673A6C05694900
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ002446 Genomic DNA. Translation: CAA05418.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ002446 Genomic DNA. Translation: CAA05418.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR000650. Gem_coat_AR1.
IPR000263. GV_A/BR1_coat.
[Graphical view]
PfamiPF00844. Gemini_coat. 1 hit.
[Graphical view]
PRINTSiPR00224. GEMCOATAR1.
PR00223. GEMCOATARBR1.
ProtoNetiSearch...

Entry informationi

Entry nameiO72703_9GEMI
AccessioniPrimary (citable) accession number: O72703
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: June 8, 2016
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.