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O72121 (VP2_CACV4) Reviewed, UniProtKB/Swiss-Prot

Last modified May 29, 2013. Version 41. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Protein VP2
Alternative name(s):
Minor capsid protein
Gene names
ORF Names:ORF3
OrganismCanine calicivirus (strain 48) (CaCV)
Taxonomic identifier292348 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageCaliciviridae
Virus hostCanis familiaris (Dog) (Canis lupus familiaris) [TaxID: 9615]

Protein attributes

Sequence length133 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Minor structural protein present in one or two copies per virion. Does not seem to play a role in capsid assembly, but is essential for production of infectious virus By similarity.

Subunit structure

May interact with capsid protein By similarity.

Subcellular location

Virion. Host cytoplasm By similarity.

Miscellaneous

Translated by a ribosomal terminaition-reinitiation process from the bicistronic mRNA coding for VP1 and VP2.

Sequence similarities

Belongs to the vesivirus VP2 protein family.

Ontologies

Keywords
   Cellular componentHost cytoplasm
Virion
Gene Ontology (GO)
   Cellular_componenthost cell cytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

virion

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 133133Protein VP2
PRO_0000100121

Sequences

Sequence LengthMass (Da)Tools
O72121 [UniParc].

Last modified August 1, 1998. Version 1.
Checksum: 099724FE3C3E6267

FASTA13314,780
        10         20         30         40         50         60 
MSVAAAITAG ASAAQAGTGL IGSIANAIHE GTRLKLQGQA LGAQIKFQEA ENKFNRDRFE 

        70         80         90        100        110        120 
FDKLNTERWF RLAKEQQSLV YELNTKGPAM RAQAMMDAGF RNNLYSNGNQ LTFNEVREAQ 

       130 
LSAEKRFYNP SLF 

« Hide

References

[1]"Organization of the canine calicivirus genome from the RNA polymerase gene to the poly(A) tail."
Roerink F., Hashimoto M., Tohya Y., Mochizuki M.
J. Gen. Virol. 80:929-935(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
[2]"Complete nucleotide sequence, genome organization and phylogenic analysis of the canine calicivirus."
Matsuura Y., Tohya Y., Nakamura K., Shimojima M., Roerink F., Mochizuki M., Takase K., Akashi H., Sugimura T.
Virus Genes 25:67-73(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF053720 Genomic RNA. Translation: AAC16447.1.
AB070225 Genomic RNA. Translation: BAB83603.1.
RefSeqNP_777375.1. NC_004542.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID956317.

Family and domain databases

InterProIPR007996. Vesivirus_VP2.
[Graphical view]
PfamPF05332. DUF743. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameVP2_CACV4
AccessionPrimary (citable) accession number: O72121
Entry history
Integrated into UniProtKB/Swiss-Prot: November 9, 2004
Last sequence update: August 1, 1998
Last modified: May 29, 2013
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families