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O70603

- O70603_RAT

UniProt

O70603 - O70603_RAT

Protein
Submitted name:

Collagen alpha 1 (V)

Gene

Col5a1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 53 (01 Oct 2014)
      Sequence version 1 (01 Aug 1998)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. extracellular matrix structural constituent Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Collagen alpha 1 (V)Imported
    Gene namesi
    Name:Col5a1Imported
    Encoded oniPlasmid pBluescriptImported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi70920. Col5a1.

    Subcellular locationi

    GO - Cellular componenti

    1. collagen trimer Source: UniProtKB-KW

    Expressioni

    Gene expression databases

    GenevestigatoriO70603.

    Interactioni

    Protein-protein interaction databases

    STRINGi10116.ENSRNOP00000012334.

    Family & Domainsi

    Keywords - Domaini

    CollagenImported

    Phylogenomic databases

    HOGENOMiHOG000293384.
    HOVERGENiHBG103325.
    InParanoidiO70603.

    Family and domain databases

    InterProiIPR000885. Fib_collagen_C.
    [Graphical view]
    PfamiPF01410. COLFI. 1 hit.
    [Graphical view]
    ProDomiPD002078. Fib_collagen_C. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SMARTiSM00038. COLFI. 1 hit.
    [Graphical view]
    PROSITEiPS51461. NC1_FIB. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    O70603-1 [UniParc]FASTAAdd to Basket

    « Hide

    CKDLQLCHPD FPDGEYWVDP NQGCSRDSFK VYCNFTAGGS TCVFPDKKSE    50
    GARITSWPKE NPGSWFSEFK RGKLLSYVDA EGNPVGVVQM TFLRLLSASA 100
    QQNITYNCYQ SVAWQDAATG SYDKAIRFLG SNDEEMSYDN NPYIRALVDG 150
    CATKKGYQKT VLEIDTPKVE QVPIVDIMFT DFGEASQKFG FEVGPPCFLG 200
    Length:200
    Mass (Da):22,289
    Last modified:August 1, 1998 - v1
    Checksum:i8A13E8A710D2EED4
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ005394 mRNA. Translation: CAA06509.1.
    UniGeneiRn.117.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ005394 mRNA. Translation: CAA06509.1 .
    UniGenei Rn.117.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10116.ENSRNOP00000012334.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Organism-specific databases

    RGDi 70920. Col5a1.

    Phylogenomic databases

    HOGENOMi HOG000293384.
    HOVERGENi HBG103325.
    InParanoidi O70603.

    Gene expression databases

    Genevestigatori O70603.

    Family and domain databases

    InterProi IPR000885. Fib_collagen_C.
    [Graphical view ]
    Pfami PF01410. COLFI. 1 hit.
    [Graphical view ]
    ProDomi PD002078. Fib_collagen_C. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SMARTi SM00038. COLFI. 1 hit.
    [Graphical view ]
    PROSITEi PS51461. NC1_FIB. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Collagen mRNA expression during tissue development: the temporospacial order coordinates bone morphogenesis with collagen fiber formation."
      Wurtz T., Ellerstrom C., Lundmark C., Christersson C.
      Matrix Biol. 17:349-360(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: Sprague-DawleyImported.
      Plasmid: pBluescript

    Entry informationi

    Entry nameiO70603_RAT
    AccessioniPrimary (citable) accession number: O70603
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 1, 1998
    Last sequence update: August 1, 1998
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    PlasmidImported

    External Data

    Dasty 3