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O70603 (O70603_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Collagen alpha 1 (V) EMBL CAA06509.1
Gene names
Name:Col5a1 RGD 70920
Encoded onPlasmid pBluescript EMBL CAA06509.1
OrganismRattus norvegicus (Rat) EMBL CAA06509.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length200 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   DomainCollagen EMBL CAA06509.1
   Technical termPlasmid EMBL CAA06509.1
Gene Ontology (GO)
   Cellular_componentcollagen

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionextracellular matrix structural constituent

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL CAA06509.1

Sequences

Sequence LengthMass (Da)Tools
O70603 [UniParc].

Last modified August 1, 1998. Version 1.
Checksum: 8A13E8A710D2EED4

FASTA20022,289
        10         20         30         40         50         60 
CKDLQLCHPD FPDGEYWVDP NQGCSRDSFK VYCNFTAGGS TCVFPDKKSE GARITSWPKE 

        70         80         90        100        110        120 
NPGSWFSEFK RGKLLSYVDA EGNPVGVVQM TFLRLLSASA QQNITYNCYQ SVAWQDAATG 

       130        140        150        160        170        180 
SYDKAIRFLG SNDEEMSYDN NPYIRALVDG CATKKGYQKT VLEIDTPKVE QVPIVDIMFT 

       190        200 
DFGEASQKFG FEVGPPCFLG

« Hide

References

[1]"Collagen mRNA expression during tissue development: the temporospacial order coordinates bone morphogenesis with collagen fiber formation."
Wurtz T., Ellerstrom C., Lundmark C., Christersson C.
Matrix Biol. 17:349-360(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Sprague-Dawley EMBL CAA06509.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AJ005394 mRNA. Translation: CAA06509.1.
IPIIPI00566618.
UniGeneRn.117.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000012334.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

RGD70920. Col5a1.

Phylogenomic databases

HOGENOMHOG000293384.
HOVERGENHBG103325.
InParanoidO70603.

Gene expression databases

GenevestigatorO70603.

Family and domain databases

InterProIPR000885. Fib_collagen_C.
[Graphical view]
PfamPF01410. COLFI. 1 hit.
[Graphical view]
ProDomPD002078. Fib_collagen_C. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTSM00038. COLFI. 1 hit.
[Graphical view]
PROSITEPS51461. NC1_FIB. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameO70603_RAT
AccessionPrimary (citable) accession number: O70603
Entry history
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: April 3, 2013
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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