Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

O70603

- O70603_RAT

UniProt

O70603 - O70603_RAT

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

Collagen alpha 1 (V)

Gene

Col5a1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. extracellular matrix structural constituent Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Collagen alpha 1 (V)Imported
Gene namesi
Name:Col5a1Imported
Encoded oniPlasmid pBluescriptImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi70920. Col5a1.

Subcellular locationi

GO - Cellular componenti

  1. collagen trimer Source: UniProtKB-KW
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriO70603.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000012334.

Family & Domainsi

Keywords - Domaini

CollagenImported

Phylogenomic databases

HOGENOMiHOG000293384.
HOVERGENiHBG103325.

Family and domain databases

InterProiIPR000885. Fib_collagen_C.
[Graphical view]
PfamiPF01410. COLFI. 1 hit.
[Graphical view]
ProDomiPD002078. Fib_collagen_C. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00038. COLFI. 1 hit.
[Graphical view]
PROSITEiPS51461. NC1_FIB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

O70603-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
CKDLQLCHPD FPDGEYWVDP NQGCSRDSFK VYCNFTAGGS TCVFPDKKSE
60 70 80 90 100
GARITSWPKE NPGSWFSEFK RGKLLSYVDA EGNPVGVVQM TFLRLLSASA
110 120 130 140 150
QQNITYNCYQ SVAWQDAATG SYDKAIRFLG SNDEEMSYDN NPYIRALVDG
160 170 180 190 200
CATKKGYQKT VLEIDTPKVE QVPIVDIMFT DFGEASQKFG FEVGPPCFLG
Length:200
Mass (Da):22,289
Last modified:August 1, 1998 - v1
Checksum:i8A13E8A710D2EED4
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ005394 mRNA. Translation: CAA06509.1.
UniGeneiRn.117.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ005394 mRNA. Translation: CAA06509.1 .
UniGenei Rn.117.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10116.ENSRNOP00000012334.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

RGDi 70920. Col5a1.

Phylogenomic databases

HOGENOMi HOG000293384.
HOVERGENi HBG103325.

Gene expression databases

Genevestigatori O70603.

Family and domain databases

InterProi IPR000885. Fib_collagen_C.
[Graphical view ]
Pfami PF01410. COLFI. 1 hit.
[Graphical view ]
ProDomi PD002078. Fib_collagen_C. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SMARTi SM00038. COLFI. 1 hit.
[Graphical view ]
PROSITEi PS51461. NC1_FIB. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Collagen mRNA expression during tissue development: the temporospacial order coordinates bone morphogenesis with collagen fiber formation."
    Wurtz T., Ellerstrom C., Lundmark C., Christersson C.
    Matrix Biol. 17:349-360(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Sprague-DawleyImported.
    Plasmid: pBluescript

Entry informationi

Entry nameiO70603_RAT
AccessioniPrimary (citable) accession number: O70603
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: October 29, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

PlasmidImported

External Data

Dasty 3