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Protein
Submitted name:

Collagen alpha 1 (V)

Gene

Col5a1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Collagen alpha 1 (V)Imported
Gene namesi
Name:Col5a1Imported
Encoded oniPlasmid pBluescriptImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi70920. Col5a1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000012334.

Family & Domainsi

Keywords - Domaini

CollagenImported

Phylogenomic databases

HOGENOMiHOG000293384.
HOVERGENiHBG103325.

Family and domain databases

InterProiIPR000885. Fib_collagen_C.
[Graphical view]
PfamiPF01410. COLFI. 1 hit.
[Graphical view]
ProDomiPD002078. Fib_collagen_C. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00038. COLFI. 1 hit.
[Graphical view]
PROSITEiPS51461. NC1_FIB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

O70603-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
CKDLQLCHPD FPDGEYWVDP NQGCSRDSFK VYCNFTAGGS TCVFPDKKSE
60 70 80 90 100
GARITSWPKE NPGSWFSEFK RGKLLSYVDA EGNPVGVVQM TFLRLLSASA
110 120 130 140 150
QQNITYNCYQ SVAWQDAATG SYDKAIRFLG SNDEEMSYDN NPYIRALVDG
160 170 180 190 200
CATKKGYQKT VLEIDTPKVE QVPIVDIMFT DFGEASQKFG FEVGPPCFLG
Length:200
Mass (Da):22,289
Last modified:August 1, 1998 - v1
Checksum:i8A13E8A710D2EED4
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ005394 mRNA. Translation: CAA06509.1.
UniGeneiRn.117.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ005394 mRNA. Translation: CAA06509.1.
UniGeneiRn.117.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000012334.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

RGDi70920. Col5a1.

Phylogenomic databases

HOGENOMiHOG000293384.
HOVERGENiHBG103325.

Family and domain databases

InterProiIPR000885. Fib_collagen_C.
[Graphical view]
PfamiPF01410. COLFI. 1 hit.
[Graphical view]
ProDomiPD002078. Fib_collagen_C. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00038. COLFI. 1 hit.
[Graphical view]
PROSITEiPS51461. NC1_FIB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Collagen mRNA expression during tissue development: the temporospacial order coordinates bone morphogenesis with collagen fiber formation."
    Wurtz T., Ellerstrom C., Lundmark C., Christersson C.
    Matrix Biol. 17:349-360(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Sprague-DawleyImported.
    Plasmid: pBluescript

Entry informationi

Entry nameiO70603_RAT
AccessioniPrimary (citable) accession number: O70603
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: June 24, 2015
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

PlasmidImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.