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O70490

- ACSM2_RAT

UniProt

O70490 - ACSM2_RAT

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Protein

Acyl-coenzyme A synthetase ACSM2, mitochondrial

Gene
Acsm2, Ks
Organism
Rattus norvegicus (Rat)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at transcript leveli

Functioni

Has medium-chain fatty acid:CoA ligase activity with broad substrate specificity (in vitro). Acts on acids from C4 to C(11) and on the corresponding 3-hydroxy- and 2,3- or 3,4-unsaturated acids (in vitro) By similarity.

Catalytic activityi

ATP + a carboxylate + CoA = AMP + diphosphate + an acyl-CoA.

Cofactori

Magnesium or manganese By similarity.

Enzyme regulationi

Activated by monovalent cations, such as potassium, rubidium or ammonium By similarity.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei139 – 1391Coenzyme A By similarity
Binding sitei364 – 3641Substrate By similarity
Binding sitei446 – 4461ATP By similarity
Binding sitei461 – 4611ATP By similarity
Binding sitei472 – 4721Substrate By similarity
Binding sitei501 – 5011Coenzyme A By similarity
Binding sitei532 – 5321Coenzyme A By similarity
Binding sitei557 – 5571ATP By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi221 – 2299ATP By similarity
Nucleotide bindingi359 – 3646ATP By similarity

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. butyrate-CoA ligase activity Source: UniProtKB-EC
  3. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. fatty acid metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Ligase

Keywords - Biological processi

Fatty acid metabolism, Lipid metabolism

Keywords - Ligandi

ATP-binding, Magnesium, Metal-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Acyl-coenzyme A synthetase ACSM2, mitochondrial (EC:6.2.1.2)
Alternative name(s):
Acyl-CoA synthetase medium-chain family member 2
Butyrate--CoA ligase 2
Butyryl-coenzyme A synthetase 2
Kidney-specific protein KS
Middle-chain acyl-CoA synthetase 2
Gene namesi
Name:Acsm2
Synonyms:Ks
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 1

Organism-specific databases

RGDi708383. Acsm2.

Subcellular locationi

Mitochondrion matrix By similarity

GO - Cellular componenti

  1. mitochondrial matrix Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 4646Mitochondrion Reviewed predictionAdd
BLAST
Chaini47 – 572526Acyl-coenzyme A synthetase ACSM2, mitochondrialPRO_0000306096Add
BLAST

Proteomic databases

PaxDbiO70490.
PRIDEiO70490.

PTM databases

PhosphoSiteiO70490.

Expressioni

Tissue specificityi

Detected in kidney, in proximal tubules.1 Publication

Developmental stagei

First detected in kidney from 1 week old rats. Not detectable in fetal kidney and in kidney from newborn rats.1 Publication

Inductioni

Down-regulated in kidneys from a strain of spontaneously hypertensive rats (SHR). Down-regulated after unilateral ureteral obstruction or unilateral nephrectomy.1 Publication

Gene expression databases

GenevestigatoriO70490.

Interactioni

Subunit structurei

Monomer By similarity.

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000020587.

Structurei

3D structure databases

ProteinModelPortaliO70490.
SMRiO70490. Positions 34-569.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni469 – 4713Coenzyme A binding By similarity
Regioni540 – 5423Coenzyme A binding By similarity

Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiCOG0365.
GeneTreeiENSGT00750000117290.
HOGENOMiHOG000229982.
HOVERGENiHBG053031.
InParanoidiO70490.
KOiK01896.
OrthoDBiEOG7D85VZ.
PhylomeDBiO70490.
TreeFamiTF354287.

Family and domain databases

InterProiIPR025110. AMP-bd_C.
IPR020845. AMP-binding_CS.
IPR000873. AMP-dep_Synth/Lig.
[Graphical view]
PfamiPF00501. AMP-binding. 1 hit.
PF13193. AMP-binding_C. 1 hit.
[Graphical view]
PROSITEiPS00455. AMP_BINDING. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O70490-1 [UniParc]FASTAAdd to Basket

« Hide

MHWLWKIPRL CTFWGTEMFH RTFHMNIKKL MPIQWGHQEV PAKFNFASDV    50
IDHWASLEKA GKRSPGPALW WMNGSGEELK WNFRELSEIS KQTANVLTGA 100
CGLQRGDRVA VVLPRVPEWW LVTLGCMRSG LVFMPGTTQM KSTDILYRLQ 150
SSKARAIVAG DEVVQEVDAV APDCSFLKIK LLVSEKNREG WLNFKALLKD 200
ASPIHQCVET VSQESAAIYF TSGTSGPPKM AEHSHCSLGL KAKMDAGWTG 250
LGPSDTMWTI SDTGWILNIL GSFLEPWVLG TCIFVHLLPK FDPQTVLKVL 300
SSYPINTLLG APLIYRMLLQ QDLSSYKFPH LHSCFSGGET LLPETLESWK 350
AKTGLEIREI YGQTETGITC RVSRTMKVKP GYLGTAIVPY DVQVIDEQGN 400
VLPPGKEGDM ALRVKPIRPI GMFSGYVDNP KKTQANIRGD FWLLGDRGIK 450
DTEGYFHFMG RTDDIINSSG YRIGPSEVEN ALMEHPAVVE TAVISSPDPI 500
RREVVKAFVV LAPEFLSHDQ DQLTKVLQEH VKSVTAPYKY PRKVEFVLDL 550
PKTITGKIER AKLRAKEWKT SG 572
Length:572
Mass (Da):64,145
Last modified:October 2, 2007 - v2
Checksum:i34BB5FB87A43958C
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti22 – 221T → S in AAD05209. 1 Publication
Sequence conflicti99 – 991G → R in AAH78721. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF062389 mRNA. Translation: AAD05209.1.
BC078721 mRNA. Translation: AAH78721.1.
RefSeqiNP_653349.1. NM_144748.1.
UniGeneiRn.14875.

Genome annotation databases

EnsembliENSRNOT00000020587; ENSRNOP00000020587; ENSRNOG00000014976.
GeneIDi246263.
KEGGirno:246263.
UCSCiRGD:708383. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF062389 mRNA. Translation: AAD05209.1 .
BC078721 mRNA. Translation: AAH78721.1 .
RefSeqi NP_653349.1. NM_144748.1.
UniGenei Rn.14875.

3D structure databases

ProteinModelPortali O70490.
SMRi O70490. Positions 34-569.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10116.ENSRNOP00000020587.

PTM databases

PhosphoSitei O70490.

Proteomic databases

PaxDbi O70490.
PRIDEi O70490.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000020587 ; ENSRNOP00000020587 ; ENSRNOG00000014976 .
GeneIDi 246263.
KEGGi rno:246263.
UCSCi RGD:708383. rat.

Organism-specific databases

CTDi 123876.
RGDi 708383. Acsm2.

Phylogenomic databases

eggNOGi COG0365.
GeneTreei ENSGT00750000117290.
HOGENOMi HOG000229982.
HOVERGENi HBG053031.
InParanoidi O70490.
KOi K01896.
OrthoDBi EOG7D85VZ.
PhylomeDBi O70490.
TreeFami TF354287.

Miscellaneous databases

NextBioi 623619.

Gene expression databases

Genevestigatori O70490.

Family and domain databases

InterProi IPR025110. AMP-bd_C.
IPR020845. AMP-binding_CS.
IPR000873. AMP-dep_Synth/Lig.
[Graphical view ]
Pfami PF00501. AMP-binding. 1 hit.
PF13193. AMP-binding_C. 1 hit.
[Graphical view ]
PROSITEi PS00455. AMP_BINDING. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular cloning of KS, a novel rat gene expressed exclusively in the kidney."
    Hilgers K.F., Nagaraj S.K., Karginova E.A., Kazakova I.G., Chevalier R.L., Carey R.M., Pentz E.S., Gomez R.A.
    Kidney Int. 54:1444-1454(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], DEVELOPMENTAL STAGE, INDUCTION, TISSUE SPECIFICITY.
    Strain: Sprague-Dawley.
    Tissue: Kidney.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Kidney.

Entry informationi

Entry nameiACSM2_RAT
AccessioniPrimary (citable) accession number: O70490
Secondary accession number(s): Q6AZ63
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 2, 2007
Last sequence update: October 2, 2007
Last modified: April 16, 2014
This is version 76 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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