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O70230

- ZN143_MOUSE

UniProt

O70230 - ZN143_MOUSE

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Protein
Zinc finger protein 143
Gene
Znf143, Staf, Zfp143
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at protein leveli

Functioni

Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates in efficient U6 RNA polymerase III transcription via its interaction with CHD8 By similarity.1 Publication

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri237 – 26125C2H2-type 1
Add
BLAST
Zinc fingeri267 – 29125C2H2-type 2
Add
BLAST
Zinc fingeri297 – 32125C2H2-type 3
Add
BLAST
Zinc fingeri327 – 35125C2H2-type 4
Add
BLAST
Zinc fingeri357 – 38125C2H2-type 5
Add
BLAST
Zinc fingeri387 – 41125C2H2-type 6
Add
BLAST
Zinc fingeri417 – 44024C2H2-type 7
Add
BLAST

GO - Molecular functioni

  1. DNA binding Source: MGI
  2. metal ion binding Source: UniProtKB-KW
  3. protein binding Source: IntAct

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger protein 143
Short name:
Zfp-143
Alternative name(s):
Selenocysteine tRNA gene transcription-activating factor
Short name:
mStaf
Gene namesi
Name:Znf143
Synonyms:Staf, Zfp143
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 7

Organism-specific databases

MGIiMGI:1277969. Zfp143.

Subcellular locationi

Nucleus Reviewed prediction

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 638638Zinc finger protein 143
PRO_0000248071Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionine By similarity

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiO70230.
PRIDEiO70230.

PTM databases

PhosphoSiteiO70230.

Expressioni

Gene expression databases

BgeeiO70230.
CleanExiMM_ZFP143.
GenevestigatoriO70230.

Interactioni

Subunit structurei

Interacts with CHD8 By similarity.

Binary interactionsi

WithEntry#Exp.IntActNotes
Sall4Q8BX222EBI-5691478,EBI-2312582

Protein-protein interaction databases

BioGridi203516. 3 interactions.
IntActiO70230. 3 interactions.

Structurei

3D structure databases

ProteinModelPortaliO70230.
SMRiO70230. Positions 231-438.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiCOG5048.
GeneTreeiENSGT00740000114893.
HOGENOMiHOG000118073.
HOVERGENiHBG053078.
InParanoidiQ8CEI6.
OMAiKMQIVLQ.
OrthoDBiEOG7WX080.
PhylomeDBiO70230.
TreeFamiTF333498.

Family and domain databases

Gene3Di3.30.160.60. 7 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 1 hit.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 7 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 7 hits.
PS50157. ZINC_FINGER_C2H2_2. 7 hits.
[Graphical view]

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: O70230-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MLLAQINRDS QGMTEFPGGG MEAQHVTLCL TEAVTVADGD NLENMEGVSL    50
QAVTLADGST AYIQHNSKDG RLIDGQVIQL EDGSAAYVQH VPIPKSTGDS 100
LRLEDGQAVQ LEDGTTAFIH HTSKDSYDQS SLQAVQLEDG TTAYIHHAVQ 150
VPQSDTILAI QADGTVAGLH TGDATIDPDT ISALEQYAAK VSIDGSDGVT 200
STGMIGENEQ EKKMQIVLQG HATRVTPKSQ QSGEKAFRCK YDGCGKLYTT 250
AHHLKVHERS HTGDRPYQCE HSGCGKAFAT GYGLKSHFRT HTGEKPYRCS 300
EDNCTKSFKT SGDLQKHIRT HTGERPFKCP IEGCGRSFTT SNIRKVHIRT 350
HTGERPYYCT EPGCGRAFAS ATNYKNHVRI HTGEKPYVCT VPGCDKRFTE 400
YSSLYKHHVV HTHSKPYNCN HCGKTYKQIS TLAMHKRTAH NDTEPIEEEQ 450
EAFFEPPPGQ GDDVLKGSQI TYVTGVDGED IVSTQVATVT QSGLSQQVTL 500
ISQDGTQHVN ISQADMQAIG NTITMVTQDG TPITVPTHDA VISSAGTHSV 550
AMVTAEGTEG QQVAIVAQDL AAFHTASSEM GHQQHSHHLV TTETRPLTLV 600
ATSNGTQIAV QLGEQPSLEE AIRIASRIQQ GETPGLDD 638
Length:638
Mass (Da):69,040
Last modified:May 5, 2009 - v2
Checksum:i9BDA0B6C0EBC0634
GO
Isoform 2 (identifier: O70230-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     97-98: TG → R

Show »
Length:637
Mass (Da):69,038
Checksum:iAF55892CDA7BD887
GO
Isoform 3 (identifier: O70230-3) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     97-125: TGDSLRLEDGQAVQLEDGTTAFIHHTSKD → N

Show »
Length:610
Mass (Da):66,030
Checksum:i3E608E4FA31A3CDE
GO

Sequence cautioni

The sequence BAC25726.1 differs from that shown. Reason: Frameshift at position 5.
The sequence AAC16899.1 differs from that shown. Reason: Erroneous initiation.
The sequence AAH37658.1 differs from that shown. Reason: Erroneous initiation.
The sequence BAC26281.1 differs from that shown. Reason: Erroneous initiation.
The sequence CAC17144.1 differs from that shown. Reason: Erroneous initiation.

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei97 – 12529TGDSL…HTSKD → N in isoform 3.
VSP_036979Add
BLAST
Alternative sequencei97 – 982TG → R in isoform 2.
VSP_036980

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti190 – 1901K → T in BAC25726. 1 Publication
Sequence conflicti250 – 2501T → K in BAC25726. 1 Publication
Sequence conflicti261 – 2611H → D in BAC25726. 1 Publication
Sequence conflicti342 – 3421N → T in BAC25726. 1 Publication
Sequence conflicti508 – 5081H → N in BAC25726. 1 Publication
Sequence conflicti528 – 5281Q → K in BAC25726. 1 Publication
Sequence conflicti618 – 6181L → V in BAC25726. 1 Publication
Sequence conflicti634 – 6341P → A in BAC25726. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF011758 mRNA. Translation: AAC16899.1. Different initiation.
AJ278435 Genomic DNA. Translation: CAC17144.1. Different initiation.
AK028056 mRNA. Translation: BAC25726.1. Frameshift.
AK029078 mRNA. Translation: BAC26281.1. Different initiation.
AK029926 mRNA. Translation: BAC26682.1.
BC037658 mRNA. Translation: AAH37658.1. Different initiation.
CCDSiCCDS57580.1. [O70230-2]
RefSeqiNP_033307.2. NM_009281.3. [O70230-2]
XP_006507595.1. XM_006507532.1. [O70230-1]
UniGeneiMm.10815.

Genome annotation databases

EnsembliENSMUST00000084727; ENSMUSP00000081778; ENSMUSG00000061079. [O70230-2]
ENSMUST00000169638; ENSMUSP00000126015; ENSMUSG00000061079. [O70230-3]
GeneIDi20841.
KEGGimmu:20841.
UCSCiuc009jew.1. mouse. [O70230-2]
uc009jex.1. mouse. [O70230-1]
uc012fse.1. mouse. [O70230-3]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF011758 mRNA. Translation: AAC16899.1 . Different initiation.
AJ278435 Genomic DNA. Translation: CAC17144.1 . Different initiation.
AK028056 mRNA. Translation: BAC25726.1 . Frameshift.
AK029078 mRNA. Translation: BAC26281.1 . Different initiation.
AK029926 mRNA. Translation: BAC26682.1 .
BC037658 mRNA. Translation: AAH37658.1 . Different initiation.
CCDSi CCDS57580.1. [O70230-2 ]
RefSeqi NP_033307.2. NM_009281.3. [O70230-2 ]
XP_006507595.1. XM_006507532.1. [O70230-1 ]
UniGenei Mm.10815.

3D structure databases

ProteinModelPortali O70230.
SMRi O70230. Positions 231-438.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 203516. 3 interactions.
IntActi O70230. 3 interactions.

PTM databases

PhosphoSitei O70230.

Proteomic databases

PaxDbi O70230.
PRIDEi O70230.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000084727 ; ENSMUSP00000081778 ; ENSMUSG00000061079 . [O70230-2 ]
ENSMUST00000169638 ; ENSMUSP00000126015 ; ENSMUSG00000061079 . [O70230-3 ]
GeneIDi 20841.
KEGGi mmu:20841.
UCSCi uc009jew.1. mouse. [O70230-2 ]
uc009jex.1. mouse. [O70230-1 ]
uc012fse.1. mouse. [O70230-3 ]

Organism-specific databases

CTDi 20841.
MGIi MGI:1277969. Zfp143.

Phylogenomic databases

eggNOGi COG5048.
GeneTreei ENSGT00740000114893.
HOGENOMi HOG000118073.
HOVERGENi HBG053078.
InParanoidi Q8CEI6.
OMAi KMQIVLQ.
OrthoDBi EOG7WX080.
PhylomeDBi O70230.
TreeFami TF333498.

Miscellaneous databases

NextBioi 299593.
PROi O70230.
SOURCEi Search...

Gene expression databases

Bgeei O70230.
CleanExi MM_ZFP143.
Genevestigatori O70230.

Family and domain databases

Gene3Di 3.30.160.60. 7 hits.
InterProi IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view ]
Pfami PF00096. zf-C2H2. 1 hit.
[Graphical view ]
SMARTi SM00355. ZnF_C2H2. 7 hits.
[Graphical view ]
PROSITEi PS00028. ZINC_FINGER_C2H2_1. 7 hits.
PS50157. ZINC_FINGER_C2H2_2. 7 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular cloning and characterization of the murine staf cDNA encoding a transcription activating factor for the selenocysteine tRNA gene in mouse mammary gland."
    Adachi K., Saito H., Tanaka T., Oka T.
    J. Biol. Chem. 273:8598-8606(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION.
    Strain: 129/SvJ.
    Tissue: Liver.
  2. "Genomic organization, chromosomal mapping and promoter analysis of the mouse selenocysteine tRNA gene transcription-activating factor (mStaf) gene."
    Adachi K., Katsuyama M., Song S., Oka T.
    Biochem. J. 346:45-51(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  3. "Comparative architectural aspects of regions of conserved synteny on human chromosome 11p15.3 and mouse chromosome 7 (including genes WEE1 and LMO1)."
    Cichutek A., Brueckmann T., Seipel B., Hauser H., Schlaubitz S., Prawitt D., Hankeln T., Schmidt E.R., Winterpacht A., Zabel B.U.
    Cytogenet. Cell Genet. 93:277-283(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  4. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Strain: C57BL/6J.
    Tissue: Cerebellum, Skin and Testis.
  5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
    Strain: FVB/N.
    Tissue: Mammary tumor.

Entry informationi

Entry nameiZN143_MOUSE
AccessioniPrimary (citable) accession number: O70230
Secondary accession number(s): Q8BGB0, Q8CEI6, Q8CI27
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 5, 2006
Last sequence update: May 5, 2009
Last modified: July 9, 2014
This is version 100 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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