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Protein
Submitted name:

Exopolygalacturonase

Gene
N/A
Organism
Yersinia enterocolitica
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Enzyme and pathway databases

BRENDAi4.2.2.2. 6741.

Protein family/group databases

CAZyiGH28. Glycoside Hydrolase Family 28.

Names & Taxonomyi

Protein namesi
Submitted name:
ExopolygalacturonaseImported
OrganismiYersinia enterocoliticaImported
Taxonomic identifieri630 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2929Sequence analysisAdd
BLAST
Chaini30 – 601572Sequence analysisPRO_5004159623Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi183 ↔ 187Combined sources

Interactioni

Protein-protein interaction databases

STRINGi393305.YE0164.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2UVEX-ray2.19A/B1-601[»]
2UVFX-ray2.10A/B1-601[»]
ProteinModelPortaliO68975.
SMRiO68975. Positions 36-600.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO68975.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini37 – 153117Fibronectin type-IIIInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 28 family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4107V6P. Bacteria.
COG5434. LUCA.

Family and domain databases

Gene3Di2.160.20.10. 2 hits.
2.60.40.10. 1 hit.
InterProiIPR003961. FN3_dom.
IPR000743. Glyco_hydro_28.
IPR013783. Ig-like_fold.
IPR024535. Pectate_lyase_SF_prot.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00295. Glyco_hydro_28. 1 hit.
PF12708. Pectate_lyase_3. 1 hit.
[Graphical view]
SMARTiSM00060. FN3. 1 hit.
[Graphical view]
SUPFAMiSSF49265. SSF49265. 1 hit.
SSF51126. SSF51126. 1 hit.
PROSITEiPS50853. FN3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O68975-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQAQLQRPRT TGMLVIMASL MVGTPMAMAA KSSSLDAPQQ LQVPTLAYDE
60 70 80 90 100
SSIVLVWKAP EDTRKIVDYQ IFSAGKLLGK ASDNNDNFSP AKPYIDHFYA
110 120 130 140 150
NDKDNFQHKI VMQNFTVIGL KPETSYQFTV KAQYADGSLS VASKPITAKT
160 170 180 190 200
SAKPQIVNVR DFGAIDDGKT LNTKAIQQAI DSCKPGCRVE IPAGTYKSGA
210 220 230 240 250
LWLKSDMTLN LQAGAILLGS ENPDDYPAGY RLYPYSTIER PASLINAIDP
260 270 280 290 300
NNSKPGTFRN IRITGSGVID GNGWLRAKTA EITDELGRSL PQYVASKNSK
310 320 330 340 350
VHEDGILAKN QVEKAVSDGM DLKNAYGQRR SSLMTLRGVE NVYLAGFTVR
360 370 380 390 400
NPAFHGIMNL ENHNVVANGL IHQTYDANNG DGIEFGNSQN VMVFNNFFDT
410 420 430 440 450
GDDCINFAAG TGEKAQEQEP MKGAWLFNNY FRMGHGAIVT GSHTGAWIED
460 470 480 490 500
ILAENNVMYL TDIGLRAKST STIGGGARNV TFRNNAMRDL AKQVMVMTLD
510 520 530 540 550
YADSNANIDY PPAKIPAQFY DFTLKNVTVD NSTGKNPSIE IKGDTANKAW
560 570 580 590 600
HRLVHVNNVQ LNNVTPTAIM DLRDSEFNKV TFTELRGDTP WHFSEVKKCQ

G
Length:601
Mass (Da):65,987
Last modified:August 1, 1998 - v1
Checksum:i4ED1B8556AEACC9B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF059505 Genomic DNA. Translation: AAC15064.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF059505 Genomic DNA. Translation: AAC15064.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2UVEX-ray2.19A/B1-601[»]
2UVFX-ray2.10A/B1-601[»]
ProteinModelPortaliO68975.
SMRiO68975. Positions 36-600.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi393305.YE0164.

Protein family/group databases

CAZyiGH28. Glycoside Hydrolase Family 28.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4107V6P. Bacteria.
COG5434. LUCA.

Enzyme and pathway databases

BRENDAi4.2.2.2. 6741.

Miscellaneous databases

EvolutionaryTraceiO68975.

Family and domain databases

Gene3Di2.160.20.10. 2 hits.
2.60.40.10. 1 hit.
InterProiIPR003961. FN3_dom.
IPR000743. Glyco_hydro_28.
IPR013783. Ig-like_fold.
IPR024535. Pectate_lyase_SF_prot.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00295. Glyco_hydro_28. 1 hit.
PF12708. Pectate_lyase_3. 1 hit.
[Graphical view]
SMARTiSM00060. FN3. 1 hit.
[Graphical view]
SUPFAMiSSF49265. SSF49265. 1 hit.
SSF51126. SSF51126. 1 hit.
PROSITEiPS50853. FN3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genetic and biochemical characterization of an exopolygalacturonase and a pectate lyase from Yersinia enterocolitica."
    Liao C.-H., Revear L., Hotchkiss A., Savary B.
    Can. J. Microbiol. 45:396-403(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "The structural basis for exopolygalacturonase activity in a family 28 glycoside hydrolase."
    Abbott D.W., Boraston A.B.
    J. Mol. Biol. 368:1215-1222(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS), DISULFIDE BONDS.

Entry informationi

Entry nameiO68975_YEREN
AccessioniPrimary (citable) accession number: O68975
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: May 11, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.