Exopolygalacturonase - Yersinia enterocolitica

Preferred order of sections

Names and origin

Protein names	Submitted name: Exopolygalacturonase EMBL AAC15064.1
Organism	Yersinia enterocolitica EMBL AAC15064.1
Taxonomic identifier	630 [NCBI]
Taxonomic lineage	Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Yersinia

Protein attributes

Sequence length	601 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Contains 1 fibronectin type-III domain. RuleBase RU000718

Ontologies

Keywords
Ligand	Metal-binding PDB 2UVF Nickel PDB 2UVF
Technical term	3D-structure PDB 2UVF
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW polygalacturonase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Sites

Metal binding

376

1

Nickel PDB 2UVF

Metal binding

401

1

Nickel PDB 2UVF

Metal binding

435

1

Nickel; via tele nitrogen PDB 2UVF

Sequences

Sequence

Length

Mass (Da)

Tools

O68975 [UniParc].

Last modified August 1, 1998. Version 1.
Checksum: 4ED1B8556AEACC9B
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FASTA

601

65,987

        10         20         30         40         50         60 
MQAQLQRPRT TGMLVIMASL MVGTPMAMAA KSSSLDAPQQ LQVPTLAYDE SSIVLVWKAP 

        70         80         90        100        110        120 
EDTRKIVDYQ IFSAGKLLGK ASDNNDNFSP AKPYIDHFYA NDKDNFQHKI VMQNFTVIGL 

       130        140        150        160        170        180 
KPETSYQFTV KAQYADGSLS VASKPITAKT SAKPQIVNVR DFGAIDDGKT LNTKAIQQAI 

       190        200        210        220        230        240 
DSCKPGCRVE IPAGTYKSGA LWLKSDMTLN LQAGAILLGS ENPDDYPAGY RLYPYSTIER 

       250        260        270        280        290        300 
PASLINAIDP NNSKPGTFRN IRITGSGVID GNGWLRAKTA EITDELGRSL PQYVASKNSK 

       310        320        330        340        350        360 
VHEDGILAKN QVEKAVSDGM DLKNAYGQRR SSLMTLRGVE NVYLAGFTVR NPAFHGIMNL 

       370        380        390        400        410        420 
ENHNVVANGL IHQTYDANNG DGIEFGNSQN VMVFNNFFDT GDDCINFAAG TGEKAQEQEP 

       430        440        450        460        470        480 
MKGAWLFNNY FRMGHGAIVT GSHTGAWIED ILAENNVMYL TDIGLRAKST STIGGGARNV 

       490        500        510        520        530        540 
TFRNNAMRDL AKQVMVMTLD YADSNANIDY PPAKIPAQFY DFTLKNVTVD NSTGKNPSIE 

       550        560        570        580        590        600 
IKGDTANKAW HRLVHVNNVQ LNNVTPTAIM DLRDSEFNKV TFTELRGDTP WHFSEVKKCQ 


G

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References

[1]	"Genetic and biochemical characterization of an exopolygalacturonase and a pectate lyase from Yersinia enterocolitica." Liao C.H., Revear L., Hotchkiss A., Savary B. Can. J. Microbiol. 45:396-403(1999) [PubMed: 10446714] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"The structural basis for exopolygalacturonase activity in a family 28 glycoside hydrolase." Abbott D.W., Boraston A.B. J. Mol. Biol. 368:1215-1222(2007) [PubMed: 17397864] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS) OF 1-597 IN COMPLEX WITH NICKEL.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AF059505 Genomic DNA. Translation: AAC15064.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2UVF	X-ray	2.10	A/B	1-597	[»]

ProteinModelPortal

O68975.

SMR

O68975. Positions 36-600.

ModBase

Search...

Protein family/group databases

CAZy

GH28. Glycoside Hydrolase Family 28.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Enzyme and pathway databases

BRENDA

4.2.2.2. 74505.

Family and domain databases

InterPro

IPR003961. Fibronectin_type3.
IPR000743. Glyco_hydro_28.
IPR013783. Ig-like_fold.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]

Gene3D

G3DSA:2.60.40.10. Ig-like_fold. 1 hit.
G3DSA:2.160.20.10. Pectin_lyas_fold. 1 hit.

Pfam

PF00041. fn3. 1 hit.
PF00295. Glyco_hydro_28. 1 hit.
[Graphical view]

SMART

SM00060. FN3. 1 hit.
[Graphical view]

SUPFAM

SSF49265. FN_III-like. 1 hit.
SSF51126. Pectin_lyas_like. 1 hit.

PROSITE

PS50853. FN3. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

O68975_YEREN

Accession

Primary (citable) accession number: O68975

Entry history

Integrated into UniProtKB/TrEMBL:	August 1, 1998
Last sequence update:	August 1, 1998
Last modified:	October 19, 2011
This is version 62 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)