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Protein

50S ribosomal protein L35

Gene

rpmI

Organism
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciVCHO:VCA0289-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L35UniRule annotation
Gene namesi
Name:rpmIUniRule annotation
Ordered Locus Names:VC_A0289
OrganismiVibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Taxonomic identifieri243277 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000000584 Componenti: Chromosome 2

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 646450S ribosomal protein L35PRO_0000177451Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi243277.VCA0289.

Structurei

3D structure databases

ProteinModelPortaliO68845.
SMRiO68845. Positions 2-64.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L35P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG41082NX. Bacteria.
COG0291. LUCA.
KOiK02916.
OMAiFKCKQSH.

Family and domain databases

HAMAPiMF_00514. Ribosomal_L35. 1 hit.
InterProiIPR021137. Ribosomal_L35.
IPR018265. Ribosomal_L35_CS.
IPR001706. Ribosomal_L35_non-mt.
[Graphical view]
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]
PRINTSiPR00064. RIBOSOMALL35.
TIGRFAMsiTIGR00001. rpmI_bact. 1 hit.
PROSITEiPS00936. RIBOSOMAL_L35. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O68845-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKMKNNKGA AKRFKKTAGG IKYKHATKRH ILTKRTTKNK RQLRPNAILP
60
KCELAAVARM LPYA
Length:64
Mass (Da):7,289
Last modified:August 1, 1998 - v1
Checksum:iB41D4162F0197671
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF055586 Genomic DNA. Translation: AAC38422.1.
AF179591 Genomic DNA. Translation: AAD53321.1.
AE003853 Genomic DNA. Translation: AAF96197.1.
PIRiA82476.
RefSeqiNP_232685.1. NC_002506.1.
WP_001885060.1. NC_002506.1.

Genome annotation databases

EnsemblBacteriaiAAF96197; AAF96197; VC_A0289.
GeneIDi2611984.
KEGGivch:VCA0289.
PATRICi20085145. VBIVibCho83274_2924.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF055586 Genomic DNA. Translation: AAC38422.1.
AF179591 Genomic DNA. Translation: AAD53321.1.
AE003853 Genomic DNA. Translation: AAF96197.1.
PIRiA82476.
RefSeqiNP_232685.1. NC_002506.1.
WP_001885060.1. NC_002506.1.

3D structure databases

ProteinModelPortaliO68845.
SMRiO68845. Positions 2-64.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243277.VCA0289.

Protocols and materials databases

DNASUi2611984.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF96197; AAF96197; VC_A0289.
GeneIDi2611984.
KEGGivch:VCA0289.
PATRICi20085145. VBIVibCho83274_2924.

Phylogenomic databases

eggNOGiENOG41082NX. Bacteria.
COG0291. LUCA.
KOiK02916.
OMAiFKCKQSH.

Enzyme and pathway databases

BioCyciVCHO:VCA0289-MONOMER.

Family and domain databases

HAMAPiMF_00514. Ribosomal_L35. 1 hit.
InterProiIPR021137. Ribosomal_L35.
IPR018265. Ribosomal_L35_CS.
IPR001706. Ribosomal_L35_non-mt.
[Graphical view]
PfamiPF01632. Ribosomal_L35p. 1 hit.
[Graphical view]
PRINTSiPR00064. RIBOSOMALL35.
TIGRFAMsiTIGR00001. rpmI_bact. 1 hit.
PROSITEiPS00936. RIBOSOMAL_L35. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL35_VIBCH
AccessioniPrimary (citable) accession number: O68845
Secondary accession number(s): Q9JPV0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: August 1, 1998
Last modified: September 7, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.