O68541 (O68541_9GAMM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Endoxylanase EMBL AAD09439.3

Gene names

Name:

xynC EMBL AAD09439.3

Organism

Cellvibrio mixtus EMBL AAD09439.3

Taxonomic identifier

39650 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Cellvibrio

Protein attributes

Sequence length	379 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 10 (cellulase F) family. RuleBase RU003432

Ontologies

Keywords
Biological process	Xylan degradation EMBL AAD09439.3
Molecular function	Glycosidase RuleBase RU003432 Hydrolase
Technical term	3D-structure PDB 1UR2 PDB 1UQY PDB 1UR1 PDB 1UQZ PDB 2CNC
Gene Ontology (GO)
Biological process	xylan catabolic process Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O68541 [UniParc]. Last modified March 1, 2004. Version 4. Checksum: BC6F155B26A35502	FASTA	379	42,913
	10 20 30 40 50 60 MNLSRRQLLA LTSAGIAMGQ ASKLAAATKA AEQTGLKSAY KDNFLIGAAL NATIASGADE 70 80 90 100 110 120 RLNTLIAKEF NSITPENCMK WGVLRDAQGQ WNWKDADAFV AFGTKHNLHM VGHTLVWHSQ 130 140 150 160 170 180 IHDEVFKNAD GSYISKAALQ KKMEEHITTL AGRYKGKLAA WDVVNEAVGD DLKMRDSHWY 190 200 210 220 230 240 KIMGDDFIYN AFTLANEVDP KAHLMYNDYN IERTGKREAT VEMIERLQKR GMPIHGLGIQ 250 260 270 280 290 300 GHLGIDTPPI AEIEKSIIAF AKLGLRVHFT ELDVDVLPSV WELPVAEVST RFEYKPERDP 310 320 330 340 350 360 YTKGLPQEMQ DKLAKRYEDL FKLFIKHSDK IDRATFWGVS DDASWLNGFP IPGRTNYPLL 370 FDRKLQPKDA YFRLLDLKR

References

[1]	Fontes C.M.G.A., Clarke J.H., Hazlewood G.P., Gilbert H.J., Fernandes T.H., Ferreira L.M.A. Submitted (JUN-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[2]	Gilbert H.J. Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[3]	"The mechanisms by which family 10 glycoside hydrolases bind decorated substrates." Pell G., Taylor E.J., Gloster T.M., Turkenburg J.P., Fontes C.M., Ferreira L.M., Nagy T., Clark S.J., Davies G.J., Gilbert H.J. J. Biol. Chem. 279:9597-9605(2004) [PubMed: 14668328] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.43 ANGSTROMS) OF 11-379.
[4]	"Probing the structural basis for the difference in thermostability displayed by family 10 xylanases." Xie H., Flint J., Vardakou M., Lakey J.H., Lewis R.J., Gilbert H.J., Dumon C. J. Mol. Biol. 360:157-167(2006) [PubMed: 16762367] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AF049493 Genomic DNA. Translation: AAD09439.3.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1UQY	X-ray	1.72	A	11-379	[»]
1UQZ	X-ray	1.55	A	11-379	[»]
1UR1	X-ray	1.43	A	11-379	[»]
1UR2	X-ray	1.60	A	11-379	[»]
2CNC	X-ray	2.40	A	1-379	[»]

ProteinModelPortal

O68541.

SMR

O68541. Positions 34-379.

ModBase

Search...

Protein family/group databases

CAZy

GH10. Glycoside Hydrolase Family 10.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Family and domain databases

InterPro

IPR001000. Glyco_hydro_10.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
IPR006311. TAT_signal.
[Graphical view]

Gene3D

G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.

Pfam

PF00331. Glyco_hydro_10. 1 hit.
[Graphical view]

PRINTS

PR00134. GLHYDRLASE10.

SMART

SM00633. Glyco_10. 1 hit.
[Graphical view]

SUPFAM

SSF51445. Glyco_hydro_cat. 1 hit.

PROSITE

PS00591. GLYCOSYL_HYDROL_F10. 1 hit.
PS51318. TAT. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

O68541_9GAMM

Accession

Primary (citable) accession number: O68541

Entry history

Integrated into UniProtKB/TrEMBL:	August 1, 1998
Last sequence update:	March 1, 2004
Last modified:	May 31, 2011
This is version 55 of the entry and version 4 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)