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Protein
Submitted name:

ClcR

Gene

clcR

Organism
Rhodococcus opacus (Nocardia opaca)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
ClcRImported
Gene namesi
Name:clcRImported
OrganismiRhodococcus opacus (Nocardia opaca)Imported
Taxonomic identifieri37919 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesNocardiaceaeRhodococcus

Structurei

3D structure databases

ProteinModelPortaliO67986.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini4 – 6158HTH lysR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.UniRule annotation

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O67986-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIPLDVRQLE CFIAVAEERH VGHAAARLHM TQPPLTRRIS RLEREIGAQL
60 70 80 90 100
FVRTLTGVEL TAAGLVLLDR AYRIVALAEN TLERVRLADA GEAGALAVGY
110 120 130 140 150
FGSTIFGLVP RLLRLFLDTR PEVRIVIERA TRDMQAQAIR DGRMHIGFSR
160 170 180 190 200
QYPAEPDLAV RNIASEPLYV ALPETHPLLS KQKVLLADIQ NEPLVLFPSA
210 220 230 240 250
PRPGFADEVV QLLMRTGGEP RIEAEASDVV TALAYVAIAQ LCAVVPRSAS
260 270 280 290 300
NIALPGVVYV PLADAPPESL SCIYRAIETP TLVRAFLDHL DLLDPATLDL

YED
Length:303
Mass (Da):33,262
Last modified:August 1, 1998 - v1
Checksum:iB419D5CA331B020D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF003948 Genomic DNA. Translation: AAC38250.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF003948 Genomic DNA. Translation: AAC38250.1.

3D structure databases

ProteinModelPortaliO67986.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Evolutionary relationship between chlorocatechol catabolic enzymes from Rhodococcus opacus 1CP and their counterparts in proteobacteria: sequence divergence and functional convergence."
    Eulberg D., Kourbatova E.M., Golovleva L.A., Schloemann M.
    J. Bacteriol. 180:1082-1094(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 1CPImported.

Entry informationi

Entry nameiO67986_RHOOP
AccessioniPrimary (citable) accession number: O67986
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: February 17, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.