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Protein
Submitted name:

Transcriptional regulator (NtrC family)

Gene

ntrC2

Organism
Aquifex aeolicus (strain VF5)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

ATP-bindingUniRule annotationSAAS annotation, DNA-bindingSAAS annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator (NtrC family)Imported
Gene namesi
Name:ntrC2Imported
Ordered Locus Names:aq_1792Imported
OrganismiAquifex aeolicus (strain VF5)Imported
Taxonomic identifieri224324 [NCBI]
Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeAquifex
Proteomesi
  • UP000000798 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi224324.aq_1792.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2M8GNMR-X428-497[»]
4G3VX-ray1.70A/B1-172[»]
ProteinModelPortaliO67661.
SMRiO67661.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini193 – 421Sigma-54 factor interactionInterPro annotationAdd BLAST229

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili163 – 190Sequence analysisAdd BLAST28

Sequence similaritiesi

Contains 1 sigma-54 factor interaction domain.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG4108JUA. Bacteria.
COG3604. LUCA.
HOGENOMiHOG000058487.
InParanoidiO67661.
OMAiTERSLWH.
OrthoDBiPOG091H03UM.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
3.30.450.40. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003018. GAF.
IPR029016. GAF_dom-like.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
[Graphical view]
PfamiPF13185. GAF_2. 1 hit.
PF02954. HTH_8. 1 hit.
PF00158. Sigma54_activat. 1 hit.
[Graphical view]
PRINTSiPR01590. HTHFIS.
SMARTiSM00382. AAA. 1 hit.
SM00065. GAF. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF55781. SSF55781. 1 hit.
PROSITEiPS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O67661-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MERLKLKEIN VVNEITKILT GDYTFEESLK EVLKVLYSYL GVEHSFIAIR
60 70 80 90 100
EGNTLRIASS YGYFLNKDVA FKKGEGITGK VFQRGIPLVI PNVKHNSAFA
110 120 130 140 150
NKTGIGRLLT EKHALIAAPI KVGGEVKGVI TIFKEFSDKE SLENFYQTIN
160 170 180 190 200
VIGNLLGMFF KLREKFESEK KAWEEQRKEL TRELSEKYSL HGLIGKSKVM
210 220 230 240 250
RELIDTIEKV AKTDSTVLIL GESGTGKSLI ARIIHYESSR REKPFLTVNC
260 270 280 290 300
ASIPETLLES ELFGYEKGAF TGAYTTKKGK FELANGGTIF LDEIGDMPLS
310 320 330 340 350
LQAKLLRALQ EREIERLGSE KPIKVDVRII TATNKDLEKL VKEGKFREDL
360 370 380 390 400
YYRINVVPLY VPPLRERKED IPILIEYYLK ELNKKYGKEV YLSEDALEVL
410 420 430 440 450
LEYDYPGNIR ELINILERVV ILNNGRVTSS ELPELLRKRE RKTGDLPKFI
460 470 480 490
EETEKKRIIE ALEKTGYVKS RAAKLLGYTL RQLDYRIKKY GIELKKF
Length:497
Mass (Da):56,999
Last modified:August 1, 1998 - v1
Checksum:iF757F1F9AC60CB9C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC07620.1.
PIRiC70454.
RefSeqiNP_214227.1. NC_000918.1.
WP_010881164.1. NC_000918.1.

Genome annotation databases

EnsemblBacteriaiAAC07620; AAC07620; aq_1792.
GeneIDi1193468.
KEGGiaae:aq_1792.
PATRICi20960566. VBIAquAeo85532_1384.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC07620.1.
PIRiC70454.
RefSeqiNP_214227.1. NC_000918.1.
WP_010881164.1. NC_000918.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2M8GNMR-X428-497[»]
4G3VX-ray1.70A/B1-172[»]
ProteinModelPortaliO67661.
SMRiO67661.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224324.aq_1792.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC07620; AAC07620; aq_1792.
GeneIDi1193468.
KEGGiaae:aq_1792.
PATRICi20960566. VBIAquAeo85532_1384.

Phylogenomic databases

eggNOGiENOG4108JUA. Bacteria.
COG3604. LUCA.
HOGENOMiHOG000058487.
InParanoidiO67661.
OMAiTERSLWH.
OrthoDBiPOG091H03UM.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
3.30.450.40. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003018. GAF.
IPR029016. GAF_dom-like.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
IPR027417. P-loop_NTPase.
IPR002078. Sigma_54_int.
IPR025662. Sigma_54_int_dom_ATP-bd_1.
IPR025943. Sigma_54_int_dom_ATP-bd_2.
IPR025944. Sigma_54_int_dom_CS.
[Graphical view]
PfamiPF13185. GAF_2. 1 hit.
PF02954. HTH_8. 1 hit.
PF00158. Sigma54_activat. 1 hit.
[Graphical view]
PRINTSiPR01590. HTHFIS.
SMARTiSM00382. AAA. 1 hit.
SM00065. GAF. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF55781. SSF55781. 1 hit.
PROSITEiPS00675. SIGMA54_INTERACT_1. 1 hit.
PS00676. SIGMA54_INTERACT_2. 1 hit.
PS00688. SIGMA54_INTERACT_3. 1 hit.
PS50045. SIGMA54_INTERACT_4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO67661_AQUAE
AccessioniPrimary (citable) accession number: O67661
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: November 2, 2016
This is version 124 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.