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Protein
Submitted name:

RNA polymerase sigma factor RpoS

Gene

rpoS

Organism
Aquifex aeolicus (strain VF5)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.SAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma factor RpoSImported
Gene namesi
Name:rpoSImported
Ordered Locus Names:aq_1452Imported
OrganismiAquifex aeolicus (strain VF5)Imported
Taxonomic identifieri224324 [NCBI]
Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeAquifex
Proteomesi
  • UP000000798 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi224324.aq_1452.

Structurei

3D structure databases

ProteinModelPortaliO67437.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini270 – 296RNA_pol_sigma70InterPro annotationAdd BLAST27

Sequence similaritiesi

Belongs to the sigma-70 factor family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105DG1. Bacteria.
COG0568. LUCA.
HOGENOMiHOG000270273.
InParanoidiO67437.
KOiK03086.
OMAiVKLYYGI.
OrthoDBiPOG091H0012.

Family and domain databases

Gene3Di1.10.10.10. 3 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 2 hits.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 3 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00716. SIGMA70_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O67437-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIPDTEQELI NQYLKKISKI PLLTPEEEKE LARRAKQGDK EALKKLVESN
60 70 80 90 100
LRFVVSVAKQ YIGYGLPFSE LIAAGNLGLL EAAKRFDPDR GVKFISYAVW
110 120 130 140 150
WIRQAIMQAL SQQTGAVRIP LKQSHIINKI SHIYGELSKK LEREPSPEEI
160 170 180 190 200
AEELSKQMIA KELEKELGRE PTEEEIEERF KKEGYKITPE EVEKYLQVCR
210 220 230 240 250
VPLSLDAPVG ENEDTFFIDF LSKHGTAEVE EKVIQEVIQK EIDDLLSKLT
260 270 280 290 300
DKERKVIELR FGLKGNEPKT LREIGEILGL SRERVRQLET RALRKLRSLA
310
MKRHLKDFLS
Length:310
Mass (Da):35,777
Last modified:August 1, 1998 - v1
Checksum:i3A43778E1878D76F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC07398.1.
PIRiC70426.
RefSeqiNP_214002.1. NC_000918.1.
WP_010880940.1. NC_000918.1.

Genome annotation databases

EnsemblBacteriaiAAC07398; AAC07398; aq_1452.
GeneIDi1192968.
KEGGiaae:aq_1452.
PATRICi20960036. VBIAquAeo85532_1132.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC07398.1.
PIRiC70426.
RefSeqiNP_214002.1. NC_000918.1.
WP_010880940.1. NC_000918.1.

3D structure databases

ProteinModelPortaliO67437.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224324.aq_1452.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC07398; AAC07398; aq_1452.
GeneIDi1192968.
KEGGiaae:aq_1452.
PATRICi20960036. VBIAquAeo85532_1132.

Phylogenomic databases

eggNOGiENOG4105DG1. Bacteria.
COG0568. LUCA.
HOGENOMiHOG000270273.
InParanoidiO67437.
KOiK03086.
OMAiVKLYYGI.
OrthoDBiPOG091H0012.

Family and domain databases

Gene3Di1.10.10.10. 3 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 2 hits.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 3 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00716. SIGMA70_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO67437_AQUAE
AccessioniPrimary (citable) accession number: O67437
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: November 2, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.