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Protein
Submitted name:

RNA polymerase sigma factor RpoS

Gene

rpoS

Organism
Aquifex aeolicus (strain VF5)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.SAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation, Sigma factorSAAS annotation
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciAAEO224324:G1G15-1036-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma factor RpoSImported
Gene namesi
Name:rpoSImported
Ordered Locus Names:aq_1452Imported
OrganismiAquifex aeolicus (strain VF5)Imported
Taxonomic identifieri224324 [NCBI]
Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeAquifex
Proteomesi
  • UP000000798 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi224324.aq_1452

Structurei

3D structure databases

ProteinModelPortaliO67437
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini270 – 296RNA_pol_sigma70InterPro annotationAdd BLAST27

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili235 – 255Sequence analysisAdd BLAST21

Sequence similaritiesi

Belongs to the sigma-70 factor family.SAAS annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG4105DG1 Bacteria
COG0568 LUCA
HOGENOMiHOG000270273
InParanoidiO67437
KOiK03086
OMAiITNRESQ
OrthoDBiPOG091H0012

Family and domain databases

Gene3Di1.10.10.10, 3 hits
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR000943 RNA_pol_sigma70
IPR009042 RNA_pol_sigma70_r1_2
IPR007627 RNA_pol_sigma70_r2
IPR007624 RNA_pol_sigma70_r3
IPR007630 RNA_pol_sigma70_r4
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF00140 Sigma70_r1_2, 1 hit
PF04542 Sigma70_r2, 1 hit
PF04539 Sigma70_r3, 2 hits
PF04545 Sigma70_r4, 1 hit
PRINTSiPR00046 SIGMA70FCT
SUPFAMiSSF88659 SSF88659, 3 hits
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02937 sigma70-ECF, 1 hit
PROSITEiView protein in PROSITE
PS00716 SIGMA70_2, 1 hit

Sequencei

Sequence statusi: Complete.

O67437-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIPDTEQELI NQYLKKISKI PLLTPEEEKE LARRAKQGDK EALKKLVESN
60 70 80 90 100
LRFVVSVAKQ YIGYGLPFSE LIAAGNLGLL EAAKRFDPDR GVKFISYAVW
110 120 130 140 150
WIRQAIMQAL SQQTGAVRIP LKQSHIINKI SHIYGELSKK LEREPSPEEI
160 170 180 190 200
AEELSKQMIA KELEKELGRE PTEEEIEERF KKEGYKITPE EVEKYLQVCR
210 220 230 240 250
VPLSLDAPVG ENEDTFFIDF LSKHGTAEVE EKVIQEVIQK EIDDLLSKLT
260 270 280 290 300
DKERKVIELR FGLKGNEPKT LREIGEILGL SRERVRQLET RALRKLRSLA
310
MKRHLKDFLS
Length:310
Mass (Da):35,777
Last modified:August 1, 1998 - v1
Checksum:i3A43778E1878D76F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA Translation: AAC07398.1
PIRiC70426
RefSeqiNP_214002.1, NC_000918.1
WP_010880940.1, NC_000918.1

Genome annotation databases

EnsemblBacteriaiAAC07398; AAC07398; aq_1452
GeneIDi1192968
KEGGiaae:aq_1452

Similar proteinsi

Entry informationi

Entry nameiO67437_AQUAE
AccessioniPrimary (citable) accession number: O67437
Entry historyiIntegrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: April 25, 2018
This is version 114 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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