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Protein
Submitted name:

DNA polymerase beta family

Gene

dpbF

Organism
Aquifex aeolicus (strain VF5)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

HydrolaseSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase beta familyImported
Gene namesi
Name:dpbFImported
Ordered Locus Names:aq_1422Imported
OrganismiAquifex aeolicus (strain VF5)Imported
Taxonomic identifieri224324 [NCBI]
Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeAquifex
Proteomesi
  • UP000000798 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi224324.aq_1422.

Structurei

3D structure databases

ProteinModelPortaliO67416.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 320POLXcInterPro annotationAdd BLAST318
Domaini344 – 425POLIIIAcInterPro annotationAdd BLAST82

Phylogenomic databases

eggNOGiENOG4105DCG. Bacteria.
COG1387. LUCA.
COG1796. LUCA.
HOGENOMiHOG000292866.
InParanoidiO67416.
KOiK02347.
OMAiIIAHPTG.
OrthoDBiPOG091H00ZH.

Family and domain databases

CDDicd00141. NT_POLXc. 1 hit.
Gene3Di1.10.150.110. 1 hit.
3.30.210.10. 1 hit.
InterProiIPR002054. DNA-dir_DNA_pol_X.
IPR010996. DNA_pol_b-like_N.
IPR028207. DNA_pol_B_palm_palm.
IPR002008. DNA_pol_X_beta-like.
IPR027421. DNA_pol_X_lyase_dom.
IPR004013. PHP_dom.
IPR003141. Pol/His_phosphatase_N.
IPR016195. Pol/histidinol_Pase-like.
IPR029398. PolB_thumb.
IPR022311. UCP005047_YshC.
[Graphical view]
PfamiPF14792. DNA_pol_B_palm. 1 hit.
PF14791. DNA_pol_B_thumb. 1 hit.
PF14716. HHH_8. 1 hit.
PF02811. PHP. 1 hit.
[Graphical view]
PIRSFiPIRSF005047. UCP005047_YshC. 1 hit.
PRINTSiPR00870. DNAPOLXBETA.
SMARTiSM00481. POLIIIAc. 1 hit.
SM00483. POLXc. 1 hit.
[Graphical view]
SUPFAMiSSF47802. SSF47802. 1 hit.
SSF89550. SSF89550. 1 hit.

Sequencei

Sequence statusi: Complete.

O67416-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRKNQELAK IFERMADILE FLGENPYRIR TYRRVANLIS ELQEDVEKAF
60 70 80 90 100
YTRKLHHMPG IGESTLLKIE EFLKTGTIKK YEELRRMVPE DLLELLDAPG
110 120 130 140 150
VGPKTLKIAY EQLGIRTKEE FIEALKKGKF NKIRGFGPVK ALKILRGIEL
160 170 180 190 200
WEKSKERISL IEAYPMAQEV LKYMERIKDK YENISIAGSL RRMKETIGDI
210 220 230 240 250
DILVSAKKEN WKAIHEHFTK YPGLLEVLAK GETKSSIILD TGRQVDLRTV
260 270 280 290 300
EPISWGAALQ YFTGSKQHNI RIRDIAKEKG LKVNEYGVFK VDTEERIAGE
310 320 330 340 350
TEEGVYEVLG MQWIPPELRE DWGEIELALE HKLPRLVELK DIKGDLHMHT
360 370 380 390 400
NWSDGVNTLE EMVETAYKLG YQYIVIGDHS QSARVANGLD PERYKQQWKE
410 420 430 440 450
IDRLNKEYNP KGFYILKGAE VDILPDGSLD LPDEVLEQFD FVVASVHSRF
460 470 480 490 500
EQDNTERIIK AMENPYVNMI GHPTGKQYGY REGYPVNIEK LIQKAKETGT
510 520 530 540 550
ALELNTQRMD LSPENVRKCM EAGVYIGIVT DAHSARQLHL MFLGVGLARR
560 570 580
GWATPDKVIN TFDLEGLKEF VYKKRKNLAR A
Length:581
Mass (Da):66,961
Last modified:August 1, 1998 - v1
Checksum:iABEBD9268507ED27
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC07374.1.
PIRiF70423.
RefSeqiNP_213981.1. NC_000918.1.
WP_010880919.1. NC_000918.1.

Genome annotation databases

EnsemblBacteriaiAAC07374; AAC07374; aq_1422.
GeneIDi1192947.
KEGGiaae:aq_1422.
PATRICi20959996. VBIAquAeo85532_1112.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC07374.1.
PIRiF70423.
RefSeqiNP_213981.1. NC_000918.1.
WP_010880919.1. NC_000918.1.

3D structure databases

ProteinModelPortaliO67416.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224324.aq_1422.

Protocols and materials databases

DNASUi1192947.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC07374; AAC07374; aq_1422.
GeneIDi1192947.
KEGGiaae:aq_1422.
PATRICi20959996. VBIAquAeo85532_1112.

Phylogenomic databases

eggNOGiENOG4105DCG. Bacteria.
COG1387. LUCA.
COG1796. LUCA.
HOGENOMiHOG000292866.
InParanoidiO67416.
KOiK02347.
OMAiIIAHPTG.
OrthoDBiPOG091H00ZH.

Family and domain databases

CDDicd00141. NT_POLXc. 1 hit.
Gene3Di1.10.150.110. 1 hit.
3.30.210.10. 1 hit.
InterProiIPR002054. DNA-dir_DNA_pol_X.
IPR010996. DNA_pol_b-like_N.
IPR028207. DNA_pol_B_palm_palm.
IPR002008. DNA_pol_X_beta-like.
IPR027421. DNA_pol_X_lyase_dom.
IPR004013. PHP_dom.
IPR003141. Pol/His_phosphatase_N.
IPR016195. Pol/histidinol_Pase-like.
IPR029398. PolB_thumb.
IPR022311. UCP005047_YshC.
[Graphical view]
PfamiPF14792. DNA_pol_B_palm. 1 hit.
PF14791. DNA_pol_B_thumb. 1 hit.
PF14716. HHH_8. 1 hit.
PF02811. PHP. 1 hit.
[Graphical view]
PIRSFiPIRSF005047. UCP005047_YshC. 1 hit.
PRINTSiPR00870. DNAPOLXBETA.
SMARTiSM00481. POLIIIAc. 1 hit.
SM00483. POLXc. 1 hit.
[Graphical view]
SUPFAMiSSF47802. SSF47802. 1 hit.
SSF89550. SSF89550. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiO67416_AQUAE
AccessioniPrimary (citable) accession number: O67416
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: November 2, 2016
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.