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Protein

Cold shock-like protein

Gene

csp

Organism
Aquifex aeolicus (strain VF5)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciAAEO224324:GJBH-929-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Cold shock-like protein
Gene namesi
Name:csp
Synonyms:cspC
Ordered Locus Names:aq_1302
ORF Names:aq_1303A
OrganismiAquifex aeolicus (strain VF5)
Taxonomic identifieri224324 [NCBI]
Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeAquifex
Proteomesi
  • UP000000798 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7070Cold shock-like proteinPRO_0000100278Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi224324.aq_1303a.

Structurei

3D structure databases

ProteinModelPortaliO67327.
SMRiO67327. Positions 4-65.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini5 – 6561CSDAdd
BLAST

Sequence similaritiesi

Contains 1 CSD (cold-shock) domain.Curated

Phylogenomic databases

eggNOGiENOG4105VEQ. Bacteria.
COG1278. LUCA.
HOGENOMiHOG000070674.
InParanoidiO67327.
KOiK03704.
OMAiFEIQDGH.
OrthoDBiPOG091H01GR.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR012156. Cold_shock_CspA.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PIRSFiPIRSF002599. Cold_shock_A. 1 hit.
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O67327-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSFRGTVKWF SKDKGYGFIT REDTNADVFV HFTDIQMEGF KTLQKGQKVE
60 70
FDVVEDTKGP RAKNVRVLGE
Length:70
Mass (Da):8,061
Last modified:August 1, 1998 - v1
Checksum:i7F0DA15B0A4B5A9A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC07291.1.
PIRiD70412.
RefSeqiNP_213891.1. NC_000918.1.
WP_010880829.1. NC_000918.1.

Genome annotation databases

EnsemblBacteriaiAAC07291; AAC07291; aq_1303a.
GeneIDi1192765.
KEGGiaae:aq_1303a.
PATRICi20959796. VBIAquAeo85532_1015.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC07291.1.
PIRiD70412.
RefSeqiNP_213891.1. NC_000918.1.
WP_010880829.1. NC_000918.1.

3D structure databases

ProteinModelPortaliO67327.
SMRiO67327. Positions 4-65.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224324.aq_1303a.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC07291; AAC07291; aq_1303a.
GeneIDi1192765.
KEGGiaae:aq_1303a.
PATRICi20959796. VBIAquAeo85532_1015.

Phylogenomic databases

eggNOGiENOG4105VEQ. Bacteria.
COG1278. LUCA.
HOGENOMiHOG000070674.
InParanoidiO67327.
KOiK03704.
OMAiFEIQDGH.
OrthoDBiPOG091H01GR.

Enzyme and pathway databases

BioCyciAAEO224324:GJBH-929-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR012156. Cold_shock_CspA.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PIRSFiPIRSF002599. Cold_shock_A. 1 hit.
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiCSP_AQUAE
AccessioniPrimary (citable) accession number: O67327
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: August 1, 1998
Last modified: September 7, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.