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Protein
Submitted name:

RNA polymerase sigma factor FliA

Gene

fliA

Organism
Aquifex aeolicus (strain VF5)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation, Sigma factorSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma factor FliAImported
Gene namesi
Name:fliAImported
Ordered Locus Names:aq_1218Imported
OrganismiAquifex aeolicus (strain VF5)Imported
Taxonomic identifieri224324 [NCBI]
Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeAquifex
Proteomesi
  • UP000000798 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  • sigma factor antagonist complex Source: CAFA

Interactioni

GO - Molecular functioni

  • antisigma factor binding Source: CAFA
  • disordered domain specific binding Source: CAFA

Protein-protein interaction databases

IntActiO67268. 1 interactor.
STRINGi224324.aq_1218.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1RP3X-ray2.30A/C/E/G1-236[»]
1SC5X-ray3.26A1-236[»]
ProteinModelPortaliO67268.
SMRiO67268.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO67268.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini41 – 54RNA_pol_sigma70InterPro annotationAdd BLAST14

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili88 – 111Sequence analysisAdd BLAST24

Sequence similaritiesi

Belongs to the sigma-70 factor family.SAAS annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG4105DN4. Bacteria.
COG1191. LUCA.
HOGENOMiHOG000270271.
InParanoidiO67268.
KOiK02405.
OMAiIKFETYA.
OrthoDBiPOG091H02NW.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiView protein in InterPro
IPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR012845. RNA_pol_sigma_FliA_WhiG.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR036388. WH-like_DNA-bd_sf.
PfamiView protein in Pfam
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
PIRSFiPIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02479. FliA_WhiG. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiView protein in PROSITE
PS00715. SIGMA70_1. 1 hit.

Sequencei

Sequence statusi: Complete.

O67268-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNPYSNQIE REELILKYLP LVKAIATNIK KHLPEDVDIR DLISYGVIGL
60 70 80 90 100
IKAVDNLSTE NPKRAEAYIK LRIKGAIYDY LRSLDFGSRQ VREKERRIKE
110 120 130 140 150
VVEKLKEKLG REPTDEEVAK ELGISTEELF KTLDKINFSY ILSLEEVFRD
160 170 180 190 200
FARDYSELIP SSTNVEEEVI KRELTEKVKE AVSKLPEREK LVIQLIFYEE
210 220 230
LPAKEVAKIL ETSVSRVSQL KAKALERLRE MLSNPL
Length:236
Mass (Da):27,409
Last modified:August 1, 1998 - v1
Checksum:iAB8025759809C9A6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC07229.1.
PIRiA70405.
RefSeqiNP_213832.1. NC_000918.1.
WP_010880770.1. NC_000918.1.

Genome annotation databases

EnsemblBacteriaiAAC07229; AAC07229; aq_1218.
GeneIDi1192614.
KEGGiaae:aq_1218.
PATRICifig|224324.8.peg.946.

Entry informationi

Entry nameiO67268_AQUAE
AccessioniPrimary (citable) accession number: O67268
Entry historyiIntegrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: October 25, 2017
This is version 127 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported