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Protein
Submitted name:

RNA polymerase sigma factor FliA

Gene

fliA

Organism
Aquifex aeolicus (strain VF5)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma factor FliAImported
Gene namesi
Name:fliAImported
Ordered Locus Names:aq_1218Imported
OrganismiAquifex aeolicus (strain VF5)Imported
Taxonomic identifieri224324 [NCBI]
Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeAquifex
Proteomesi
  • UP000000798 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

IntActiO67268. 1 interactor.
STRINGi224324.aq_1218.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1RP3X-ray2.30A/C/E/G1-236[»]
1SC5X-ray3.26A1-236[»]
ProteinModelPortaliO67268.
SMRiO67268.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO67268.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini41 – 54RNA_pol_sigma70InterPro annotationAdd BLAST14

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili88 – 111Sequence analysisAdd BLAST24

Sequence similaritiesi

Belongs to the sigma-70 factor family.SAAS annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG4105DN4. Bacteria.
COG1191. LUCA.
HOGENOMiHOG000270271.
InParanoidiO67268.
KOiK02405.
OMAiAIEDMEQ.
OrthoDBiPOG091H02NW.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR016263. RNA_pol_sigma_factor.
IPR012845. RNA_pol_sigma_FliA_WhiG.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PIRSFiPIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02479. FliA_WhiG. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O67268-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNPYSNQIE REELILKYLP LVKAIATNIK KHLPEDVDIR DLISYGVIGL
60 70 80 90 100
IKAVDNLSTE NPKRAEAYIK LRIKGAIYDY LRSLDFGSRQ VREKERRIKE
110 120 130 140 150
VVEKLKEKLG REPTDEEVAK ELGISTEELF KTLDKINFSY ILSLEEVFRD
160 170 180 190 200
FARDYSELIP SSTNVEEEVI KRELTEKVKE AVSKLPEREK LVIQLIFYEE
210 220 230
LPAKEVAKIL ETSVSRVSQL KAKALERLRE MLSNPL
Length:236
Mass (Da):27,409
Last modified:August 1, 1998 - v1
Checksum:iAB8025759809C9A6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC07229.1.
PIRiA70405.
RefSeqiNP_213832.1. NC_000918.1.
WP_010880770.1. NC_000918.1.

Genome annotation databases

EnsemblBacteriaiAAC07229; AAC07229; aq_1218.
GeneIDi1192614.
KEGGiaae:aq_1218.
PATRICi20959654. VBIAquAeo85532_0946.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC07229.1.
PIRiA70405.
RefSeqiNP_213832.1. NC_000918.1.
WP_010880770.1. NC_000918.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1RP3X-ray2.30A/C/E/G1-236[»]
1SC5X-ray3.26A1-236[»]
ProteinModelPortaliO67268.
SMRiO67268.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO67268. 1 interactor.
STRINGi224324.aq_1218.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC07229; AAC07229; aq_1218.
GeneIDi1192614.
KEGGiaae:aq_1218.
PATRICi20959654. VBIAquAeo85532_0946.

Phylogenomic databases

eggNOGiENOG4105DN4. Bacteria.
COG1191. LUCA.
HOGENOMiHOG000270271.
InParanoidiO67268.
KOiK02405.
OMAiAIEDMEQ.
OrthoDBiPOG091H02NW.

Miscellaneous databases

EvolutionaryTraceiO67268.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR016263. RNA_pol_sigma_factor.
IPR012845. RNA_pol_sigma_FliA_WhiG.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PIRSFiPIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02479. FliA_WhiG. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO67268_AQUAE
AccessioniPrimary (citable) accession number: O67268
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: November 2, 2016
This is version 120 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.