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Protein

Selenide, water dikinase

Gene

selD

Organism
Aquifex aeolicus (strain VF5)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Synthesizes selenophosphate from selenide and ATP.By similarity

Catalytic activityi

ATP + selenide + H2O = AMP + selenophosphate + phosphate.

Cofactori

Mg2+By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei13 – 131Sequence analysis
Sitei16 – 161Important for catalytic activityBy similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi222 – 2287ATPSequence analysis

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Kinase, Transferase

Keywords - Ligandi

ATP-binding, Magnesium, Nucleotide-binding, Selenium

Enzyme and pathway databases

BioCyciAAEO224324:GJBH-735-MONOMER.
BRENDAi2.7.9.3. 396.

Names & Taxonomyi

Protein namesi
Recommended name:
Selenide, water dikinase (EC:2.7.9.3)
Alternative name(s):
Selenium donor protein
Selenophosphate synthase
Gene namesi
Name:selD
Ordered Locus Names:aq_1030
OrganismiAquifex aeolicus (strain VF5)
Taxonomic identifieri224324 [NCBI]
Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeAquifex
Proteomesi
  • UP000000798 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 336336Selenide, water dikinasePRO_0000127614Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi224324.aq_1030.

Structurei

Secondary structure

1
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi4 – 74Combined sources
Beta strandi13 – 164Combined sources
Helixi24 – 285Combined sources
Beta strandi36 – 405Combined sources
Beta strandi42 – 443Combined sources
Beta strandi47 – 504Combined sources
Beta strandi53 – 6210Combined sources
Beta strandi65 – 673Combined sources
Helixi69 – 8618Combined sources
Beta strandi90 – 10011Combined sources
Turni102 – 1043Combined sources
Helixi107 – 12317Combined sources
Beta strandi127 – 1359Combined sources
Beta strandi140 – 1489Combined sources
Helixi150 – 1523Combined sources
Beta strandi165 – 1684Combined sources
Helixi174 – 1829Combined sources
Helixi188 – 1914Combined sources
Helixi192 – 1998Combined sources
Helixi203 – 2119Combined sources
Beta strandi215 – 2195Combined sources
Helixi224 – 23613Combined sources
Beta strandi239 – 2435Combined sources
Helixi244 – 2463Combined sources
Helixi251 – 2588Combined sources
Helixi264 – 27310Combined sources
Turni274 – 2763Combined sources
Beta strandi277 – 2793Combined sources
Helixi283 – 2908Combined sources
Beta strandi298 – 3025Combined sources
Helixi304 – 3085Combined sources
Helixi310 – 3178Combined sources
Beta strandi322 – 33615Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2YYEX-ray2.10A/B1-336[»]
2ZAUX-ray2.00A/B/C27-336[»]
2ZODX-ray1.98A/B1-336[»]
ProteinModelPortaliO67139.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO67139.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105D4F. Bacteria.
COG0709. LUCA.
HOGENOMiHOG000219299.
InParanoidiO67139.
KOiK01008.
OMAiPGSRFGK.
OrthoDBiEOG6VF32H.

Family and domain databases

Gene3Di3.30.1330.10. 1 hit.
3.90.650.10. 1 hit.
HAMAPiMF_00625. SelD.
InterProiIPR010918. AIR_synth_C_dom.
IPR016188. PurM-like_N.
IPR023061. SelD_I.
IPR004536. SPS/SelD.
[Graphical view]
PfamiPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFiPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMiSSF56042. SSF56042. 1 hit.
TIGRFAMsiTIGR00476. selD. 1 hit.

Sequencei

Sequence statusi: Complete.

O67139-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVELLKLVRS SGUAAKVGPG DLQEILKGFN IYTDESTLVS IGDDAGVYEH
60 70 80 90 100
NGIIWVYTVD IITPVVNDPY LWGAISTANA LSDVYAMGGI PVNALAISCF
110 120 130 140 150
NNCELDIEIF REVIRGALDK LREAKTVLLG GHTIDDKEPK FGLSVAGICP
160 170 180 190 200
EGKYITQSGA QVGQLLILTK PIGTGILIKG LKEGILKEED INEAIENMLA
210 220 230 240 250
LNDKARNLML SLDATACTDV TGFGLLGHAW NICKNSNIGA RIFFEKVPYY
260 270 280 290 300
QLSENLVKKK IYPKGAIENL NFVKNYLKSN LDNWKLILLS DPVTSGGLLF
310 320 330
TINKEKLEKI DETAKELEVN YWIIGETIAE NVLEVL
Length:336
Mass (Da):36,856
Last modified:February 26, 2008 - v3
Checksum:i035E32948AB4755B
GO

Sequence cautioni

The sequence AAC07095.1 differs from that shown. Reason: Erroneous termination at position 13. Translated as Sec.Curated

Non-standard residue

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-standard residuei13 – 131SelenocysteineSequence analysis

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC07095.1. Sequence problems.
PIRiH70388.
RefSeqiNP_213702.1. NC_000918.1.
WP_010880640.1. NC_000918.1.

Genome annotation databases

EnsemblBacteriaiAAC07095; AAC07095; aq_1030.
GeneIDi1193773.
KEGGiaae:aq_1030.
PATRICi20959364. VBIAquAeo85532_0804.

Keywords - Coding sequence diversityi

Selenocysteine

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC07095.1. Sequence problems.
PIRiH70388.
RefSeqiNP_213702.1. NC_000918.1.
WP_010880640.1. NC_000918.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2YYEX-ray2.10A/B1-336[»]
2ZAUX-ray2.00A/B/C27-336[»]
2ZODX-ray1.98A/B1-336[»]
ProteinModelPortaliO67139.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224324.aq_1030.

Protocols and materials databases

DNASUi1193773.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC07095; AAC07095; aq_1030.
GeneIDi1193773.
KEGGiaae:aq_1030.
PATRICi20959364. VBIAquAeo85532_0804.

Phylogenomic databases

eggNOGiENOG4105D4F. Bacteria.
COG0709. LUCA.
HOGENOMiHOG000219299.
InParanoidiO67139.
KOiK01008.
OMAiPGSRFGK.
OrthoDBiEOG6VF32H.

Enzyme and pathway databases

BioCyciAAEO224324:GJBH-735-MONOMER.
BRENDAi2.7.9.3. 396.

Miscellaneous databases

EvolutionaryTraceiO67139.

Family and domain databases

Gene3Di3.30.1330.10. 1 hit.
3.90.650.10. 1 hit.
HAMAPiMF_00625. SelD.
InterProiIPR010918. AIR_synth_C_dom.
IPR016188. PurM-like_N.
IPR023061. SelD_I.
IPR004536. SPS/SelD.
[Graphical view]
PfamiPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFiPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMiSSF56042. SSF56042. 1 hit.
TIGRFAMsiTIGR00476. selD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: VF5.

Entry informationi

Entry nameiSELD_AQUAE
AccessioniPrimary (citable) accession number: O67139
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: February 26, 2008
Last modified: April 13, 2016
This is version 100 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.