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Protein
Submitted name:

Transcriptional regulator (LysR family)

Gene

lysR1

Organism
Aquifex aeolicus (strain VF5)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciAAEO224324:GJBH-464-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator (LysR family)Imported
Gene namesi
Name:lysR1Imported
Ordered Locus Names:aq_638Imported
OrganismiAquifex aeolicus (strain VF5)Imported
Taxonomic identifieri224324 [NCBI]
Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeAquifex
Proteomesi
  • UP000000798 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliO66882.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini2 – 5958HTH lysR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105DUM. Bacteria.
COG0583. LUCA.
HOGENOMiHOG000233518.
InParanoidiO66882.
OMAiCKAIDER.
OrthoDBiEOG67MF25.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O66882-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIDISKLKTF VTVAELGSFS KASEVLYITQ PAVTQQIKAL EKTVGAKLFQ
60 70 80 90 100
RQGGRMVLTE EGKRIYEIAK LLLNSYEGLM EEIARIKKDL KDTLFLVLSA
110 120 130 140 150
TPSEYIIPKI IAEFHKEFPS SKIKIFTGNS HDVEEGLVSG VLNVGIIERK
160 170 180 190 200
PSDKFVDIPF LEDEIVFFTY PEHPIAKEGE IEPERLYELD LVMREAHSGT
210 220 230 240 250
RKLVREKLEE LGIMFDKLNI KIESTSSRNI IQIVKNGYGC SFLSKGLLNG
260 270 280 290 300
EIKAGNLVVV KIKGFEIKRR FHIIYPKNST ITFLASNFIQ YLLEKTKEVE

LTV
Length:303
Mass (Da):34,391
Last modified:August 1, 1998 - v1
Checksum:i0642A5A05CA584BE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC06837.1.
PIRiF70356.
RefSeqiNP_213442.1. NC_000918.1.
WP_010880380.1. NC_000918.1.

Genome annotation databases

EnsemblBacteriaiAAC06837; AAC06837; aq_638.
GeneIDi1193944.
KEGGiaae:aq_638.
PATRICi20958774. VBIAquAeo85532_0520.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC06837.1.
PIRiF70356.
RefSeqiNP_213442.1. NC_000918.1.
WP_010880380.1. NC_000918.1.

3D structure databases

ProteinModelPortaliO66882.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC06837; AAC06837; aq_638.
GeneIDi1193944.
KEGGiaae:aq_638.
PATRICi20958774. VBIAquAeo85532_0520.

Phylogenomic databases

eggNOGiENOG4105DUM. Bacteria.
COG0583. LUCA.
HOGENOMiHOG000233518.
InParanoidiO66882.
OMAiCKAIDER.
OrthoDBiEOG67MF25.

Enzyme and pathway databases

BioCyciAAEO224324:GJBH-464-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: VF5Imported.

Entry informationi

Entry nameiO66882_AQUAE
AccessioniPrimary (citable) accession number: O66882
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: March 16, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.