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Protein
Submitted name:

RNA polymerase sigma factor RpoN

Gene

rpoN

Organism
Aquifex aeolicus (strain VF5)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciAAEO224324:GJBH-440-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma factor RpoNImported
Gene namesi
Name:rpoNImported
Ordered Locus Names:aq_599Imported
OrganismiAquifex aeolicus (strain VF5)Imported
Taxonomic identifieri224324 [NCBI]
Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeAquifex
Proteomesi
  • UP000000798 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi224324.aq_599.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2AHQNMR-A323-398[»]
2K9LNMR-A60-135[»]
2K9MNMR-A69-198[»]
2O8KNMR-A338-398[»]
2O9LNMR-A338-398[»]
ProteinModelPortaliO66858.
SMRiO66858. Positions 323-389.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO66858.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini75 – 224150Sigma54_CBDInterPro annotationAdd
BLAST
Domaini245 – 397153Sigma54_DBDInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4105DTW. Bacteria.
COG1508. LUCA.
HOGENOMiHOG000071904.
InParanoidiO66858.
KOiK03092.
OMAiDIREFIM.
OrthoDBiPOG091H02EW.

Family and domain databases

InterProiIPR000394. RNA_pol_sigma_54.
IPR007046. RNA_pol_sigma_54_core-bd.
IPR007634. RNA_pol_sigma_54_DNA-bd.
[Graphical view]
PfamiPF00309. Sigma54_AID. 1 hit.
PF04963. Sigma54_CBD. 1 hit.
PF04552. Sigma54_DBD. 1 hit.
[Graphical view]
PIRSFiPIRSF000774. RpoN. 1 hit.
PRINTSiPR00045. SIGMA54FCT.
TIGRFAMsiTIGR02395. rpoN_sigma. 1 hit.
PROSITEiPS00718. SIGMA54_2. 1 hit.
PS50044. SIGMA54_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O66858-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLNQRLEVRQ KLNLKLLLKQ DLELLTYQTQ ELEKLIHEEV LVNPLIKGVF
60 70 80 90 100
KKIPKSFEVK ETVPYQIPYT PSELEELQQN IKLELEGKEQ ELALELLNYL
110 120 130 140 150
NEKGFLSKSV EEISDVLRCS VEELEKVRQK VLRLEPLGVC SKDVWEFLEL
160 170 180 190 200
QIEEIYPEEE EILKKALRDL KRGKKLKPEI KGKLSRLRLF PLSSSAEKVY
210 220 230 240 250
TFAKVDAIIE EENGEFFIYL YEDFIDIDLN EEYWELYKKS RNLQKELKEA
260 270 280 290 300
FERYESIRKV LDIRRRNLRK VLEKIVERQK DFLTGKGSLK PLTLREVSSE
310 320 330 340 350
IGIHESTLSR IVNSKYVKTP VGTYSLRTFF VRESAEGLTQ GELMKLIKEI
360 370 380 390
VENEDKRKPY SDQEIANILK EKGFKVARRT VAKYREMLGI PSSRERRI
Length:398
Mass (Da):47,005
Last modified:August 1, 1998 - v1
Checksum:iDFCBB8382D21366A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC06814.1.
PIRiF70353.
RefSeqiNP_213418.1. NC_000918.1.
WP_010880356.1. NC_000918.1.

Genome annotation databases

EnsemblBacteriaiAAC06814; AAC06814; aq_599.
GeneIDi1193276.
KEGGiaae:aq_599.
PATRICi20958708. VBIAquAeo85532_0487.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC06814.1.
PIRiF70353.
RefSeqiNP_213418.1. NC_000918.1.
WP_010880356.1. NC_000918.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2AHQNMR-A323-398[»]
2K9LNMR-A60-135[»]
2K9MNMR-A69-198[»]
2O8KNMR-A338-398[»]
2O9LNMR-A338-398[»]
ProteinModelPortaliO66858.
SMRiO66858. Positions 323-389.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224324.aq_599.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC06814; AAC06814; aq_599.
GeneIDi1193276.
KEGGiaae:aq_599.
PATRICi20958708. VBIAquAeo85532_0487.

Phylogenomic databases

eggNOGiENOG4105DTW. Bacteria.
COG1508. LUCA.
HOGENOMiHOG000071904.
InParanoidiO66858.
KOiK03092.
OMAiDIREFIM.
OrthoDBiPOG091H02EW.

Enzyme and pathway databases

BioCyciAAEO224324:GJBH-440-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO66858.

Family and domain databases

InterProiIPR000394. RNA_pol_sigma_54.
IPR007046. RNA_pol_sigma_54_core-bd.
IPR007634. RNA_pol_sigma_54_DNA-bd.
[Graphical view]
PfamiPF00309. Sigma54_AID. 1 hit.
PF04963. Sigma54_CBD. 1 hit.
PF04552. Sigma54_DBD. 1 hit.
[Graphical view]
PIRSFiPIRSF000774. RpoN. 1 hit.
PRINTSiPR00045. SIGMA54FCT.
TIGRFAMsiTIGR02395. rpoN_sigma. 1 hit.
PROSITEiPS00718. SIGMA54_2. 1 hit.
PS50044. SIGMA54_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO66858_AQUAE
AccessioniPrimary (citable) accession number: O66858
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: September 7, 2016
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.