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Protein
Submitted name:

RNA polymerase sigma factor RpoN

Gene

rpoN

Organism
Aquifex aeolicus (strain VF5)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

BioCyciAAEO224324:G1G15-436-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma factor RpoNImported
Gene namesi
Name:rpoNImported
Ordered Locus Names:aq_599Imported
OrganismiAquifex aeolicus (strain VF5)Imported
Taxonomic identifieri224324 [NCBI]
Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeAquifex
Proteomesi
  • UP000000798 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi224324.aq_599

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2AHQNMR-A323-398[»]
2K9LNMR-A60-135[»]
2K9MNMR-A69-198[»]
2O8KNMR-A338-398[»]
2O9LNMR-A338-398[»]
5UI5X-ray3.40I/V61-398[»]
ProteinModelPortaliO66858
SMRiO66858
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO66858

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini74 – 224Sigma54_CBDInterPro annotationAdd BLAST151
Domaini245 – 397Sigma54_DBDInterPro annotationAdd BLAST153

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili240 – 260Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG4105DTW Bacteria
COG1508 LUCA
HOGENOMiHOG000071904
InParanoidiO66858
KOiK03092
OMAiVTTQKFM
OrthoDBiPOG091H02EW

Family and domain databases

Gene3Di1.10.10.1330, 1 hit
InterProiView protein in InterPro
IPR000394 RNA_pol_sigma_54
IPR007046 RNA_pol_sigma_54_core-bd
IPR007634 RNA_pol_sigma_54_DNA-bd
IPR038709 RpoN_core-bd_sf
PANTHERiPTHR32248 PTHR32248, 1 hit
PfamiView protein in Pfam
PF00309 Sigma54_AID, 1 hit
PF04963 Sigma54_CBD, 1 hit
PF04552 Sigma54_DBD, 1 hit
PIRSFiPIRSF000774 RpoN, 2 hits
PRINTSiPR00045 SIGMA54FCT
TIGRFAMsiTIGR02395 rpoN_sigma, 1 hit
PROSITEiView protein in PROSITE
PS00718 SIGMA54_2, 1 hit

Sequencei

Sequence statusi: Complete.

O66858-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLNQRLEVRQ KLNLKLLLKQ DLELLTYQTQ ELEKLIHEEV LVNPLIKGVF
60 70 80 90 100
KKIPKSFEVK ETVPYQIPYT PSELEELQQN IKLELEGKEQ ELALELLNYL
110 120 130 140 150
NEKGFLSKSV EEISDVLRCS VEELEKVRQK VLRLEPLGVC SKDVWEFLEL
160 170 180 190 200
QIEEIYPEEE EILKKALRDL KRGKKLKPEI KGKLSRLRLF PLSSSAEKVY
210 220 230 240 250
TFAKVDAIIE EENGEFFIYL YEDFIDIDLN EEYWELYKKS RNLQKELKEA
260 270 280 290 300
FERYESIRKV LDIRRRNLRK VLEKIVERQK DFLTGKGSLK PLTLREVSSE
310 320 330 340 350
IGIHESTLSR IVNSKYVKTP VGTYSLRTFF VRESAEGLTQ GELMKLIKEI
360 370 380 390
VENEDKRKPY SDQEIANILK EKGFKVARRT VAKYREMLGI PSSRERRI
Length:398
Mass (Da):47,005
Last modified:August 1, 1998 - v1
Checksum:iDFCBB8382D21366A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA Translation: AAC06814.1
PIRiF70353
RefSeqiNP_213418.1, NC_000918.1
WP_010880356.1, NC_000918.1

Genome annotation databases

EnsemblBacteriaiAAC06814; AAC06814; aq_599
GeneIDi1193276
KEGGiaae:aq_599
PATRICifig|224324.8.peg.487

Entry informationi

Entry nameiO66858_AQUAE
AccessioniPrimary (citable) accession number: O66858
Entry historyiIntegrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: May 23, 2018
This is version 113 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

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